Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP39Q53GS9 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
USP39Q53GS9 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.22□□□□□ -1.73
USP39Q53GS9 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP39Q53GS9 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.21□□□□□ -1.74
USP39Q53GS9 AC106871.1-201ENST00000568324 3102 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 RNU6-1252P-201ENST00000363054 104 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 Y_RNA.188-201ENST00000363952 111 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 RNU6-702P-201ENST00000364982 107 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 Y_RNA.557-201ENST00000384680 107 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 MIR449B-201ENST00000384995 97 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 MRPL42P3-201ENST00000401492 326 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AL139397.2-201ENST00000404529 772 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 MIR1911-201ENST00000410783 80 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 RNU6-954P-201ENST00000411355 107 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.21□□□□□ -1.74
USP39Q53GS9 MCFD2P1-201ENST00000417812 300 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AC108734.1-201ENST00000439549 399 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 TXNP1-201ENST00000441872 371 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.21□□□□□ -1.74
USP39Q53GS9 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AL133547.1-201ENST00000448546 220 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 ABCF2P2-201ENST00000450549 296 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.21□□□□□ -1.74
USP39Q53GS9 AC104308.1-201ENST00000454621 333 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 RPL30P15-201ENST00000457129 321 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AL136126.1-201ENST00000473603 402 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 TRBV1-201ENST00000476502 284 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.21□□□□□ -1.74
USP39Q53GS9 AC010655.3-201ENST00000478818 450 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 RPS29P19-201ENST00000479709 171 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.21□□□□□ -1.74
USP39Q53GS9 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.21□□□□□ -1.74
USP39Q53GS9 RNU6-764P-201ENST00000516396 105 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AC009902.1-201ENST00000519351 183 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 RANP9-201ENST00000519957 271 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.21□□□□□ -1.74
USP39Q53GS9 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP39Q53GS9 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.21□□□□□ -1.74
USP39Q53GS9 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.21□□□□□ -1.74
USP39Q53GS9 MIR4790-201ENST00000577799 79 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 MIR3672-201ENST00000584290 82 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.21□□□□□ -1.74
USP39Q53GS9 Z82243.1-201ENST00000609432 473 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 AC083806.3-201ENST00000614016 455 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 Z69720.2-201ENST00000624755 279 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
USP39Q53GS9 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP39Q53GS9 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.21□□□□□ -1.74
USP39Q53GS9 AC008725.1-201ENST00000605123 2263 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.21□□□□□ -1.74
USP39Q53GS9 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.21□□□□□ -1.74
USP39Q53GS9 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.21□□□□□ -1.74
USP39Q53GS9 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
USP39Q53GS9 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP39Q53GS9 AC130650.2-201ENST00000618736 2403 ntBASIC4.21□□□□□ -1.74
USP39Q53GS9 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.21□□□□□ -1.74
USP39Q53GS9 AC068254.2-201ENST00000623938 3577 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USP39Q53GS9 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 RNA5SP258-201ENST00000362750 119 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 Y_RNA.149-201ENST00000363558 117 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 RNU5A-8P-201ENST00000364102 114 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 U3.11-201ENST00000364476 212 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.2□□□□□ -1.74
USP39Q53GS9 RNU6-26P-201ENST00000383985 107 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 MIR19A-201ENST00000384878 82 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 MIR153-1-201ENST00000384914 90 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 UBE2V1P2-201ENST00000397758 440 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USP39Q53GS9 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 GOT2P5-201ENST00000433995 546 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.2□□□□□ -1.74
USP39Q53GS9 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.2□□□□□ -1.74
USP39Q53GS9 CECR9-201ENST00000453421 199 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AL162395.1-201ENST00000457882 422 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 MIR2053-201ENST00000459295 91 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.2□□□□□ -1.74
USP39Q53GS9 AF213884.1-201ENST00000488102 463 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 Y_RNA.654-201ENST00000497848 106 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.2□□□□□ -1.74
USP39Q53GS9 AC116562.3-201ENST00000506136 177 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.2□□□□□ -1.74
USP39Q53GS9 AC006499.6-201ENST00000511169 607 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 RNU6-976P-201ENST00000516086 111 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 RNU6-1271P-201ENST00000517049 105 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AC090136.1-201ENST00000520009 240 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AC068587.5-201ENST00000528506 175 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.2□□□□□ -1.74
USP39Q53GS9 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.2□□□□□ -1.74
USP39Q53GS9 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.2□□□□□ -1.74
USP39Q53GS9 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.2□□□□□ -1.74
USP39Q53GS9 MIR5690-201ENST00000583739 73 ntBASIC4.2□□□□□ -1.74
USP39Q53GS9 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.2□□□□□ -1.74
USP39Q53GS9 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.2□□□□□ -1.74
USP39Q53GS9 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.2□□□□□ -1.74
USP39Q53GS9 RPL23AP92-201ENST00000603609 255 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms