Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
HOXA4Q00056 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA4Q00056 DDX18P3-201ENST00000404856 2007 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA4Q00056 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA4Q00056 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA4Q00056 Y_RNA.128-201ENST00000363391 112 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA4Q00056 RNU6-434P-201ENST00000384376 107 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 SNORA37-201ENST00000384504 129 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 MIR559-201ENST00000385188 96 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA4Q00056 RNU6-370P-201ENST00000411008 104 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AL160275.3-201ENST00000423876 471 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXA4Q00056 OR4C10P-201ENST00000434991 931 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXA4Q00056 RPL32P28-201ENST00000443577 397 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA4Q00056 TPT1P12-201ENST00000448968 492 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AL162388.1-201ENST00000450912 352 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 RNU6-953P-201ENST00000459154 107 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 SNORD108-201ENST00000459332 71 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AC104472.2-201ENST00000469035 601 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AC117503.1-201ENST00000472241 394 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 TRBV1-201ENST00000476502 284 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AC110792.1-201ENST00000491826 472 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AC025554.1-201ENST00000505641 188 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AC002456.2-201ENST00000509356 380 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA4Q00056 AC099522.1-202ENST00000514718 367 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 SNORA14.1-201ENST00000516113 141 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AP004371.1-201ENST00000525240 214 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA4Q00056 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA4Q00056 AL163153.1-201ENST00000554223 283 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA4Q00056 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA4Q00056 MTCO3P23-201ENST00000561363 289 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA4Q00056 AC007151.1-201ENST00000572774 483 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 RPL23AP87-202ENST00000573039 466 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 MIR3941-201ENST00000582572 103 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA4Q00056 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA4Q00056 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA4Q00056 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA4Q00056 AL360085.1-201ENST00000604713 532 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 MIR15A-201ENST00000607334 83 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 MIR6716-201ENST00000613413 80 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 AL138726.1-201ENST00000614873 333 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 MIR7151-201ENST00000617477 60 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 MIR7154-201ENST00000620673 73 ntBASIC3.49□□□□□ -1.85
HOXA4Q00056 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA4Q00056 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXA4Q00056 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
HOXA4Q00056 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
HOXA4Q00056 AL365440.1-201ENST00000436135 2167 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA4Q00056 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA4Q00056 RNU1-108P-201ENST00000362556 161 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RN7SKP44-201ENST00000363602 316 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RNU6-371P-201ENST00000364283 108 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RNA5SP479-201ENST00000364858 117 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA4Q00056 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 MTCYBP4-201ENST00000401524 249 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RPL5P18-201ENST00000406671 891 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 MIR548P-201ENST00000408336 84 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RNA5SP317-201ENST00000410176 116 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RNA5SP311-201ENST00000411290 116 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 EIF4EP1-201ENST00000422311 642 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 MTND2P23-201ENST00000422990 651 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AL591704.1-201ENST00000432574 275 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA4Q00056 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA4Q00056 PRDX3P3-201ENST00000447765 522 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA4Q00056 NIPA2P5-201ENST00000452282 464 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 NUTF2P7-201ENST00000453086 375 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 Y_RNA.639-201ENST00000458981 102 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RN7SL385P-201ENST00000468873 276 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
HOXA4Q00056 HSPE1P6-201ENST00000479457 291 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AL592156.1-201ENST00000508758 304 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA4Q00056 RPL39P5-202ENST00000512505 151 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA4Q00056 RNA5SP315-201ENST00000516340 116 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RNU6-1069P-201ENST00000516612 133 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 RNA5SP312-201ENST00000517068 116 ntBASIC3.48□□□□□ -1.85
HOXA4Q00056 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms