Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC004486.1-201ENST00000546846 233 ntBASIC2.99□□□□□ -1.93
VIMP08670 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.99□□□□□ -1.93
VIMP08670 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.99□□□□□ -1.93
VIMP08670 MIR3118-1-201ENST00000581787 76 ntBASIC2.99□□□□□ -1.93
VIMP08670 AP000860.1-201ENST00000605250 559 ntBASIC2.99□□□□□ -1.93
VIMP08670 AC092354.1-201ENST00000606057 376 ntBASIC2.99□□□□□ -1.93
VIMP08670 FTX_3.1-201ENST00000610451 147 ntBASIC2.99□□□□□ -1.93
VIMP08670 AC007318.2-201ENST00000620999 243 ntBASIC2.99□□□□□ -1.93
VIMP08670 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.99□□□□□ -1.93
VIMP08670 AC091953.2-201ENST00000623979 160 ntBASIC2.99□□□□□ -1.93
VIMP08670 AC110079.1-202ENST00000635213 138 ntBASIC2.99□□□□□ -1.93
VIMP08670 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.99□□□□□ -1.93
VIMP08670 AC092104.1-201ENST00000497346 1441 ntBASIC2.99□□□□□ -1.93
VIMP08670 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VIMP08670 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.98□□□□□ -1.93
VIMP08670 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VIMP08670 RNU5E-5P-201ENST00000365379 116 ntBASIC2.98□□□□□ -1.93
VIMP08670 AL356057.2-201ENST00000403318 432 ntBASIC2.98□□□□□ -1.93
VIMP08670 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
VIMP08670 Y_RNA.608-201ENST00000410647 95 ntBASIC2.98□□□□□ -1.93
VIMP08670 RNU2-62P-201ENST00000410868 191 ntBASIC2.98□□□□□ -1.93
VIMP08670 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.98□□□□□ -1.93
VIMP08670 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.98□□□□□ -1.93
VIMP08670 AL645937.1-202ENST00000421799 937 ntBASIC2.98□□□□□ -1.93
VIMP08670 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.98□□□□□ -1.93
VIMP08670 MED14P1-201ENST00000430517 648 ntBASIC2.98□□□□□ -1.93
VIMP08670 AL445584.1-201ENST00000431451 330 ntBASIC2.98□□□□□ -1.93
VIMP08670 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC2.98□□□□□ -1.93
VIMP08670 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.98□□□□□ -1.93
VIMP08670 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.98□□□□□ -1.93
VIMP08670 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.98□□□□□ -1.93
VIMP08670 SSXP1-201ENST00000453640 473 ntBASIC2.98□□□□□ -1.93
VIMP08670 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.98□□□□□ -1.93
VIMP08670 AC092798.1-201ENST00000458542 409 ntBASIC2.98□□□□□ -1.93
VIMP08670 AC109486.1-201ENST00000486833 374 ntBASIC2.98□□□□□ -1.93
VIMP08670 AC026407.1-201ENST00000518369 204 ntBASIC2.98□□□□□ -1.93
VIMP08670 AC087373.1-201ENST00000524920 491 ntBASIC2.98□□□□□ -1.93
VIMP08670 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC2.98□□□□□ -1.93
VIMP08670 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VIMP08670 AC107016.2-201ENST00000547968 190 ntBASIC2.98□□□□□ -1.93
VIMP08670 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.98□□□□□ -1.93
VIMP08670 MIR3670-2-201ENST00000582974 65 ntBASIC2.98□□□□□ -1.93
VIMP08670 MIR3670-1-201ENST00000584160 65 ntBASIC2.98□□□□□ -1.93
VIMP08670 MIR3670-3-201ENST00000584855 65 ntBASIC2.98□□□□□ -1.93
VIMP08670 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.98□□□□□ -1.93
VIMP08670 AC239868.4-201ENST00000608318 671 ntBASIC2.98□□□□□ -1.93
VIMP08670 MIR3670-4-201ENST00000612260 65 ntBASIC2.98□□□□□ -1.93
VIMP08670 AC006338.1-201ENST00000618453 749 ntBASIC2.98□□□□□ -1.93
VIMP08670 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.97□□□□□ -1.93
VIMP08670 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.97□□□□□ -1.93
VIMP08670 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
VIMP08670 RNU6-1167P-201ENST00000363227 94 ntBASIC2.97□□□□□ -1.93
VIMP08670 RNA5SP139-201ENST00000364340 117 ntBASIC2.97□□□□□ -1.93
VIMP08670 Y_RNA.245-201ENST00000364493 95 ntBASIC2.97□□□□□ -1.93
VIMP08670 RNU6-1180P-201ENST00000364935 107 ntBASIC2.97□□□□□ -1.93
VIMP08670 SNORA62.3-201ENST00000365110 153 ntBASIC2.97□□□□□ -1.93
VIMP08670 RNU6-701P-201ENST00000384059 107 ntBASIC2.97□□□□□ -1.93
VIMP08670 SNORD15B-201ENST00000384714 146 ntBASIC2.97□□□□□ -1.93
VIMP08670 SNORD67-201ENST00000390833 111 ntBASIC2.97□□□□□ -1.93
VIMP08670 AL049545.1-201ENST00000401856 572 ntBASIC2.97□□□□□ -1.93
VIMP08670 AL356583.2-201ENST00000426536 280 ntBASIC2.97□□□□□ -1.93
VIMP08670 AL365496.1-201ENST00000426885 215 ntBASIC2.97□□□□□ -1.93
VIMP08670 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.97□□□□□ -1.93
VIMP08670 UBE2D3P4-201ENST00000441973 436 ntBASIC2.97□□□□□ -1.93
VIMP08670 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.97□□□□□ -1.93
VIMP08670 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.97□□□□□ -1.93
VIMP08670 RNU7-23P-201ENST00000459465 62 ntBASIC2.97□□□□□ -1.93
VIMP08670 AC087588.1-201ENST00000462203 316 ntBASIC2.97□□□□□ -1.93
VIMP08670 MTCO2P6-201ENST00000463134 685 ntBASIC2.97□□□□□ -1.93
VIMP08670 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.97□□□□□ -1.93
VIMP08670 RBM43P1-201ENST00000476891 1081 ntBASIC2.97□□□□□ -1.93
VIMP08670 RPS29P2-201ENST00000479278 136 ntBASIC2.97□□□□□ -1.93
VIMP08670 RN7SL297P-201ENST00000483161 293 ntBASIC2.97□□□□□ -1.93
VIMP08670 RNA5SP471-201ENST00000516971 106 ntBASIC2.97□□□□□ -1.93
VIMP08670 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VIMP08670 OR5B10P-201ENST00000532869 642 ntBASIC2.97□□□□□ -1.93
VIMP08670 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.97□□□□□ -1.93
VIMP08670 ARL2BPP2-201ENST00000550907 489 ntBASIC2.97□□□□□ -1.93
VIMP08670 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.97□□□□□ -1.93
VIMP08670 AL391261.3-201ENST00000557194 520 ntBASIC2.97□□□□□ -1.93
VIMP08670 RPL21P12-201ENST00000559810 515 ntBASIC2.97□□□□□ -1.93
VIMP08670 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.97□□□□□ -1.93
VIMP08670 AC020895.1-201ENST00000595362 272 ntBASIC2.97□□□□□ -1.93
VIMP08670 AL136363.1-201ENST00000605349 337 ntBASIC2.97□□□□□ -1.93
VIMP08670 AL031775.1-201ENST00000607014 887 ntBASIC2.97□□□□□ -1.93
VIMP08670 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.97□□□□□ -1.93
VIMP08670 AC034102.8-201ENST00000615146 484 ntBASIC2.97□□□□□ -1.93
VIMP08670 MESTIT1_2.1-201ENST00000616328 235 ntBASIC2.97□□□□□ -1.93
VIMP08670 AC092140.2-201ENST00000618027 521 ntBASIC2.97□□□□□ -1.93
VIMP08670 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.97□□□□□ -1.93
VIMP08670 AC099506.2-201ENST00000623074 221 ntBASIC2.97□□□□□ -1.93
VIMP08670 CR392039.5-201ENST00000623201 510 ntBASIC2.97□□□□□ -1.93
VIMP08670 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.97□□□□□ -1.93
VIMP08670 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.97□□□□□ -1.93
VIMP08670 AC099654.7-201ENST00000635788 2127 ntBASIC2.96□□□□□ -1.93
VIMP08670 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC2.96□□□□□ -1.93
VIMP08670 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.96□□□□□ -1.94
VIMP08670 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.96□□□□□ -1.94
VIMP08670 RNU1-35P-201ENST00000362782 153 ntBASIC2.96□□□□□ -1.94
VIMP08670 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms