Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RPL21P104-201ENST00000464143 478 ntBASIC3.33□□□□□ -1.88
LDB3O75112 MTCO2P29-201ENST00000465212 189 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AC083798.1-201ENST00000472671 131 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AC233702.1-201ENST00000482905 502 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AC079382.1-201ENST00000493346 557 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AC004062.1-201ENST00000509926 645 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AC021146.1-201ENST00000511202 716 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.33□□□□□ -1.88
LDB3O75112 RNA5SP401-201ENST00000515920 127 ntBASIC3.33□□□□□ -1.88
LDB3O75112 SCARNA24.1-201ENST00000516465 137 ntBASIC3.33□□□□□ -1.88
LDB3O75112 RNU6-579P-201ENST00000516879 102 ntBASIC3.33□□□□□ -1.88
LDB3O75112 RNU6-798P-201ENST00000516912 103 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.33□□□□□ -1.88
LDB3O75112 OR5AL2P-201ENST00000532185 920 ntBASIC3.33□□□□□ -1.88
LDB3O75112 OR4T1P-201ENST00000554933 911 ntBASIC3.33□□□□□ -1.88
LDB3O75112 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.33□□□□□ -1.88
LDB3O75112 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.33□□□□□ -1.88
LDB3O75112 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.33□□□□□ -1.88
LDB3O75112 uc_338.12-201ENST00000616344 181 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AL360181.4-201ENST00000621752 134 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AP003355.3-201ENST00000623465 114 ntBASIC3.33□□□□□ -1.88
LDB3O75112 AC106871.1-201ENST00000568324 3102 ntBASIC3.33□□□□□ -1.88
LDB3O75112 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
LDB3O75112 CEP170P1-201ENST00000502249 4587 ntBASIC3.33□□□□□ -1.88
LDB3O75112 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.33□□□□□ -1.88
LDB3O75112 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
LDB3O75112 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
LDB3O75112 RPL7P26-201ENST00000333817 754 ntBASIC3.32□□□□□ -1.88
LDB3O75112 Y_RNA.58-201ENST00000362807 102 ntBASIC3.32□□□□□ -1.88
LDB3O75112 Y_RNA.154-201ENST00000363624 102 ntBASIC3.32□□□□□ -1.88
LDB3O75112 RNY3P1-201ENST00000365085 102 ntBASIC3.32□□□□□ -1.88
LDB3O75112 SNORD81.2-201ENST00000365153 76 ntBASIC3.32□□□□□ -1.88
LDB3O75112 RNY3-201ENST00000365484 102 ntBASIC3.32□□□□□ -1.88
LDB3O75112 RNU6-637P-201ENST00000384050 107 ntBASIC3.32□□□□□ -1.88
LDB3O75112 Y_RNA.490-201ENST00000384413 102 ntBASIC3.32□□□□□ -1.88
LDB3O75112 MIR135A2-201ENST00000384854 100 ntBASIC3.32□□□□□ -1.88
LDB3O75112 MT-TD-201ENST00000387419 68 ntBASIC3.32□□□□□ -1.88
LDB3O75112 RNU6-754P-201ENST00000391166 107 ntBASIC3.32□□□□□ -1.88
LDB3O75112 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AL138878.1-201ENST00000405131 347 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AL356432.1-201ENST00000405809 419 ntBASIC3.32□□□□□ -1.88
LDB3O75112 RN7SKP53-201ENST00000411337 315 ntBASIC3.32□□□□□ -1.88
LDB3O75112 CRYBB2P1-203ENST00000415709 538 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AC007390.1-201ENST00000415722 356 ntBASIC3.32□□□□□ -1.88
LDB3O75112 SNRPEP10-201ENST00000420249 274 ntBASIC3.32□□□□□ -1.88
LDB3O75112 DUTP6-201ENST00000425573 462 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AC137499.1-201ENST00000427602 88 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AC073063.1-201ENST00000434352 607 ntBASIC3.32□□□□□ -1.88
LDB3O75112 CYCSP43-201ENST00000438233 310 ntBASIC3.32□□□□□ -1.88
LDB3O75112 BNIP3P2-201ENST00000441221 577 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AC016691.1-201ENST00000441321 413 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AL121871.1-201ENST00000443413 436 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.32□□□□□ -1.88
LDB3O75112 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.32□□□□□ -1.88
LDB3O75112 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.32□□□□□ -1.88
LDB3O75112 AC112206.3-201ENST00000514578 389 ntBASIC3.32□□□□□ -1.88
LDB3O75112 Y_RNA.675-201ENST00000516389 149 ntBASIC3.32□□□□□ -1.88
LDB3O75112 Y_RNA.701-201ENST00000516812 110 ntBASIC3.32□□□□□ -1.88
LDB3O75112 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.32□□□□□ -1.88
LDB3O75112 IGKV2D-19-201ENST00000523346 262 ntBASIC3.32□□□□□ -1.88
LDB3O75112 PSMA2P1-201ENST00000526365 646 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AP000857.1-201ENST00000532151 543 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AL133271.1-201ENST00000538229 291 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.32□□□□□ -1.88
LDB3O75112 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.32□□□□□ -1.88
LDB3O75112 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.32□□□□□ -1.88
LDB3O75112 ZNF192P1-203ENST00000565888 810 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.32□□□□□ -1.88
LDB3O75112 MIR3922-201ENST00000585192 84 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AC245517.5-201ENST00000611529 162 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AL442067.2-201ENST00000614033 363 ntBASIC3.32□□□□□ -1.88
LDB3O75112 MIR6130-201ENST00000619419 109 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AC015967.1-201ENST00000619893 476 ntBASIC3.32□□□□□ -1.88
LDB3O75112 AL353748.2-201ENST00000622148 471 ntBASIC3.32□□□□□ -1.88
LDB3O75112 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.32□□□□□ -1.88
LDB3O75112 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.32□□□□□ -1.88
LDB3O75112 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
LDB3O75112 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.32□□□□□ -1.88
LDB3O75112 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LDB3O75112 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
LDB3O75112 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LDB3O75112 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LDB3O75112 RNU6-845P-201ENST00000362578 103 ntBASIC3.31□□□□□ -1.88
LDB3O75112 RNY1P12-201ENST00000364251 105 ntBASIC3.31□□□□□ -1.88
LDB3O75112 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
LDB3O75112 RNU6-116P-201ENST00000384042 109 ntBASIC3.31□□□□□ -1.88
LDB3O75112 RNU6-432P-201ENST00000384196 109 ntBASIC3.31□□□□□ -1.88
LDB3O75112 RHEBP3-201ENST00000411920 351 ntBASIC3.31□□□□□ -1.88
LDB3O75112 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.31□□□□□ -1.88
LDB3O75112 RPL30P2-201ENST00000414021 291 ntBASIC3.31□□□□□ -1.88
LDB3O75112 RPS29P4-201ENST00000414733 161 ntBASIC3.31□□□□□ -1.88
LDB3O75112 MRPL50P2-201ENST00000416821 482 ntBASIC3.31□□□□□ -1.88
LDB3O75112 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.31□□□□□ -1.88
LDB3O75112 RPS15AP12-201ENST00000419498 388 ntBASIC3.31□□□□□ -1.88
LDB3O75112 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LDB3O75112 AL353678.1-201ENST00000422735 741 ntBASIC3.31□□□□□ -1.88
LDB3O75112 AL513185.2-201ENST00000425543 193 ntBASIC3.31□□□□□ -1.88
LDB3O75112 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.31□□□□□ -1.88
LDB3O75112 HMGN2P31-201ENST00000432430 273 ntBASIC3.31□□□□□ -1.88
LDB3O75112 HMGB1P12-201ENST00000438594 598 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms