Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
SMARCAL1Q9NZC9 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.4□□□□□ -1.86
SMARCAL1Q9NZC9 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.4□□□□□ -1.86
SMARCAL1Q9NZC9 RNU6-1090P-201ENST00000364065 94 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 U3.11-201ENST00000364476 212 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-1078P-201ENST00000364522 103 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 RNY3P13-201ENST00000365542 102 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 ELOCP4-201ENST00000420090 333 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 MTCO2P19-201ENST00000427513 598 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 MTND1P2-201ENST00000430604 821 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 RBMY2UP-201ENST00000453474 324 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 HMGN2P16-201ENST00000456802 261 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC105914.1-201ENST00000511798 226 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.704-201ENST00000516851 102 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 OR4T1P-201ENST00000554933 911 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 MIR1254-2-201ENST00000579553 63 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 KC877982.1-201ENST00000602313 470 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC006557.5-201ENST00000603126 811 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AL031176.1-201ENST00000604554 466 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC245389.1-201ENST00000605141 529 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 SNORA51-201ENST00000606420 132 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AL158211.4-201ENST00000606988 584 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC007038.2-201ENST00000608095 740 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC245517.5-201ENST00000611529 162 ntBASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SMARCAL1Q9NZC9 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.159-201ENST00000363674 87 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-169P-201ENST00000365336 107 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.450-201ENST00000384198 113 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 EI24P2-201ENST00000397776 1076 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-712P-201ENST00000410558 100 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 DPPA2P1-201ENST00000428060 556 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 VDAC1P3-201ENST00000434069 851 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AL136380.1-201ENST00000447970 162 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 FGF7P6-202ENST00000451282 293 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 RPL21P104-201ENST00000464143 478 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 MTAPP1-201ENST00000489154 819 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 FAM92A1P2-202ENST00000504766 877 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AC114797.1-201ENST00000514003 728 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 RPS3AP4-201ENST00000555161 764 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 SUB1P2-201ENST00000556401 297 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 COX6CP3-201ENST00000580869 223 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AL356321.1-201ENST00000621360 228 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 AL138713.1-201ENST00000624026 2130 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 MIR3688-2-201ENST00000636963 87 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 MTND5P27-201ENST00000428871 1720 ntBASIC3.39□□□□□ -1.87
SMARCAL1Q9NZC9 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 OR1S2-201ENST00000302592 978 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.9-201ENST00000362354 101 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 RNA5SP50-201ENST00000363731 107 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 RNU5A-8P-201ENST00000364102 114 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.381-201ENST00000365666 102 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-456P-201ENST00000384493 107 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 AL353193.1-201ENST00000421444 268 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 ELOCP14-201ENST00000428070 331 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 RPL23AP30-201ENST00000432419 501 ntBASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.38□□□□□ -1.87
SMARCAL1Q9NZC9 ELOCP7-201ENST00000439968 331 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms