Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 Z82190.1-201ENST00000454534 490 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 GAS5-AS1-201ENST00000602767 694 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AL359851.1-201ENST00000569460 4997 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 TPTE2P4-201ENST00000258589 1605 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 RNU6-321P-201ENST00000410912 106 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 UBE2FP3-201ENST00000436366 524 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AL929288.2-201ENST00000446368 407 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 RNU6-420P-201ENST00000458780 107 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 RN7SKP219-201ENST00000516825 296 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AC025755.1-201ENST00000521306 278 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AC104229.1-201ENST00000561364 255 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AC233266.2-201ENST00000567067 528 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.49□□□□□ -2.17
SCN3AQ9NY46 BNIP3P4-201ENST00000604946 565 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 AP002826.1-201ENST00000608835 315 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 HMGB1P24-202ENST00000615653 685 ntBASIC1.49□□□□□ -2.17
SCN3AQ9NY46 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 MTCO2P31-201ENST00000402702 684 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AL121978.1-201ENST00000402778 359 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AL589655.1-201ENST00000405398 482 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AL355497.1-201ENST00000406262 551 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 LUZP4P1-201ENST00000415420 344 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AL358453.1-201ENST00000422522 250 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AL512637.2-201ENST00000431287 1256 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.48□□□□□ -2.17
SCN3AQ9NY46 RPL32P14-201ENST00000463196 378 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 RPS15AP34-201ENST00000487776 387 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.48□□□□□ -2.17
SCN3AQ9NY46 CBX3P3-201ENST00000508108 532 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 Y_RNA.675-201ENST00000516389 149 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AC067805.1-201ENST00000559344 470 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AC015720.1-201ENST00000565251 277 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AC068135.2-201ENST00000569293 1028 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AC023043.2-201ENST00000589678 1026 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 AC068944.2-201ENST00000610373 403 ntBASIC1.48□□□□□ -2.17
SCN3AQ9NY46 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
SCN3AQ9NY46 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RNA5SP125-201ENST00000364843 120 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 SNORD48-201ENST00000364953 64 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 SNORD51.1-201ENST00000365405 77 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 TMSB4XP8-201ENST00000402089 135 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 MIR1304-201ENST00000408243 91 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RNA5SP270-201ENST00000411361 118 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 TMSB4XP6-201ENST00000415187 135 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RPL27AP8-201ENST00000424277 446 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 TMSB4XP1-201ENST00000424567 135 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC009414.1-201ENST00000427200 443 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC092170.1-201ENST00000440211 356 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC022447.3-201ENST00000506865 495 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RNU6-798P-201ENST00000516912 103 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 OR4K8P-201ENST00000578842 1048 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 KATNBL1P5-201ENST00000605015 517 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AL031601.2-202ENST00000622650 282 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC010872.1-201ENST00000624225 675 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 Y_RNA.164-201ENST00000363709 102 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RNU6-1005P-201ENST00000384519 107 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 MIR649-201ENST00000384843 97 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 SUMO2P12-201ENST00000405924 140 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RNU2-47P-201ENST00000410649 186 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RPL7L1P10-201ENST00000427790 463 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC012497.1-201ENST00000429392 575 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC005345.1-201ENST00000431868 217 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 RPL35AP22-201ENST00000436855 335 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms