Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 COTL1P1-201ENST00000422309 375 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC092447.3-201ENST00000426027 686 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 MTCO3P30-201ENST00000426425 670 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 SNRPEP9-201ENST00000436794 238 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 COX7BP2-201ENST00000437976 242 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 MTCO3P45-201ENST00000443036 613 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 SNORD11.1-201ENST00000459482 85 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 RPL37P6-201ENST00000460682 294 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 RPL9P33-201ENST00000484311 566 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 PSMA2P1-201ENST00000526365 646 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC006539.2-201ENST00000601729 572 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC107952.2-201ENST00000606048 486 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC093732.2-201ENST00000607950 274 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC092106.3-201ENST00000611308 722 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC025594.3-201ENST00000613068 790 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 AC007318.2-201ENST00000620999 243 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 MIR7157-201ENST00000635801 60 ntBASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF540Q8NDQ6 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC004520.1-201ENST00000608362 1413 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 ELF2P3-201ENST00000445099 1506 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 RNU1-35P-201ENST00000362782 153 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 SNORA67.1-201ENST00000364749 141 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 MIR181A2-201ENST00000384863 110 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 SNORD67-201ENST00000390833 111 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 RPL37P4-201ENST00000448908 268 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 ZNF886P-201ENST00000450781 723 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC011825.1-201ENST00000484967 388 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC034222.1-201ENST00000494052 532 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC026801.1-201ENST00000497178 464 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 RPL37P25-201ENST00000507308 276 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 MTND5P13-201ENST00000513046 1079 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 RNU6-927P-201ENST00000516199 100 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 RN7SKP287-201ENST00000516546 266 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AP000857.1-201ENST00000532151 543 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AL133271.1-201ENST00000538229 291 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 ELOCP31-201ENST00000540463 467 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC022080.3-201ENST00000544433 482 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC007151.1-201ENST00000572774 483 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 LARP7P3-201ENST00000579888 337 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 CLIC4P2-201ENST00000601934 717 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC245297.2-201ENST00000610119 565 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC009159.2-201ENST00000617603 606 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC010338.1-201ENST00000621823 717 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC068787.1-201ENST00000623908 691 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC068057.2-201ENST00000624047 895 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 AC009039.2-201ENST00000624524 529 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 MTND5P29-201ENST00000458676 1807 ntBASIC2.7□□□□□ -1.98
ZNF540Q8NDQ6 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 Y_RNA.245-201ENST00000364493 95 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 RNU1-138P-201ENST00000384093 164 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 SNORD116-12-201ENST00000384468 92 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 MIR524-201ENST00000385242 87 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 ANAPC10P1-201ENST00000395991 556 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 RPS3AP37-201ENST00000419176 745 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 BPY2DP-201ENST00000422208 265 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 XKRYP1-201ENST00000423438 492 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 XKRYP2-201ENST00000432915 492 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 USP9YP24-201ENST00000434374 697 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 USP9YP17-201ENST00000444617 696 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 EEF1B2P7-201ENST00000451177 676 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC090096.1-201ENST00000489168 390 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC006445.1-201ENST00000491925 405 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC098591.2-201ENST00000510152 315 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC079395.1-201ENST00000510981 262 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms