Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC008498.1-201ENST00000613012 531 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AL110115.1-201ENST00000614396 364 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC010133.1-201ENST00000615809 842 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AC015540.1-201ENST00000615828 501 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 AL359740.1-201ENST00000624340 592 ntBASIC3.43□□□□□ -1.86
COL28A1Q2UY09 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL28A1Q2UY09 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 ZNF826P-207ENST00000622273 1910 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC092447.7-201ENST00000422212 1621 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 RNU5A-6P-201ENST00000384136 116 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 MIR514A1-201ENST00000385133 98 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 EI24P2-201ENST00000397776 1076 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC127391.1-201ENST00000411737 98 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 BX323014.1-201ENST00000412876 237 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 ISCA1P6-201ENST00000427740 390 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL356867.1-201ENST00000429623 299 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL662791.1-201ENST00000441992 928 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 MTCYBP1-201ENST00000454315 1119 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL049714.1-201ENST00000466686 347 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 RPL27AP5-201ENST00000469428 449 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL049830.2-201ENST00000480072 201 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 SNORA70.18-201ENST00000516696 98 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC022616.3-201ENST00000523940 148 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL355836.1-201ENST00000555951 870 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC009063.1-201ENST00000563342 702 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL391840.1-201ENST00000571144 367 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 MIR5680-201ENST00000577577 84 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 MTND1P15-201ENST00000579262 949 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 MIR3167-201ENST00000579623 85 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC103710.3-201ENST00000608157 948 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC012531.5-201ENST00000611375 151 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL133173.2-201ENST00000614270 90 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC136475.10-201ENST00000620253 385 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AL732618.1-201ENST00000623251 301 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 FRG1KP-201ENST00000623592 341 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 AC008568.2-201ENST00000623862 2313 ntBASIC3.42□□□□□ -1.86
COL28A1Q2UY09 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.42□□□□□ -1.86
COL28A1Q2UY09 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AL137003.2-201ENST00000606924 2538 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 CR848007.1-201ENST00000442354 1699 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 SNORA20.2-201ENST00000383922 131 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 RNA5SP424-201ENST00000390988 115 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 SOD2P1-201ENST00000396543 562 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 ELOCP4-201ENST00000420090 333 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 RPL7L1P10-201ENST00000427790 463 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 DNAJC19P4-201ENST00000440115 345 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC079448.1-201ENST00000449377 373 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC006480.1-201ENST00000449887 378 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC006539.3-201ENST00000454258 129 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 RPS20P20-201ENST00000460498 340 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC004924.1-201ENST00000480160 781 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 NDUFB4P9-201ENST00000511646 388 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms