Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 UBE2V1P13-201ENST00000436983 439 ntBASIC2.39□□□□□ -2.03
RFX3P48380 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.39□□□□□ -2.03
RFX3P48380 AC011816.1-201ENST00000441346 546 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.39□□□□□ -2.03
RFX3P48380 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.39□□□□□ -2.03
RFX3P48380 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
RFX3P48380 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
RFX3P48380 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.39□□□□□ -2.03
RFX3P48380 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.39□□□□□ -2.03
RFX3P48380 MEMO1P3-201ENST00000459811 302 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AC126182.1-201ENST00000478134 357 ntBASIC2.39□□□□□ -2.03
RFX3P48380 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.39□□□□□ -2.03
RFX3P48380 HMGB1P36-201ENST00000487709 576 ntBASIC2.39□□□□□ -2.03
RFX3P48380 RPS29P20-201ENST00000489592 171 ntBASIC2.39□□□□□ -2.03
RFX3P48380 RPS27P27-201ENST00000498779 255 ntBASIC2.39□□□□□ -2.03
RFX3P48380 EIF4EP3-201ENST00000498782 656 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.39□□□□□ -2.03
RFX3P48380 RNU6-840P-201ENST00000517275 65 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.39□□□□□ -2.03
RFX3P48380 HMGN1P28-201ENST00000521340 364 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.39□□□□□ -2.03
RFX3P48380 MIR5194-201ENST00000582634 120 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AL355877.2-201ENST00000603670 358 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AL161729.4-201ENST00000604650 476 ntBASIC2.39□□□□□ -2.03
RFX3P48380 MTND4LP5-201ENST00000605152 292 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AC090186.1-201ENST00000605991 572 ntBASIC2.39□□□□□ -2.03
RFX3P48380 RNU4-5P-201ENST00000607255 135 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.39□□□□□ -2.03
RFX3P48380 AC013476.2-201ENST00000614456 459 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AC006386.1-201ENST00000619436 415 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AC007998.5-201ENST00000622938 237 ntBASIC2.39□□□□□ -2.03
RFX3P48380 MTND1P37-201ENST00000636562 264 ntBASIC2.39□□□□□ -2.03
RFX3P48380 MIR7515-201ENST00000637837 67 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AC022336.2-201ENST00000568966 2538 ntBASIC2.39□□□□□ -2.03
RFX3P48380 AL138713.1-201ENST00000624026 2130 ntBASIC2.39□□□□□ -2.03
RFX3P48380 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.39□□□□□ -2.03
RFX3P48380 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
RFX3P48380 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.38□□□□□ -2.03
RFX3P48380 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
RFX3P48380 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
RFX3P48380 RNU6-636P-201ENST00000384598 107 ntBASIC2.38□□□□□ -2.03
RFX3P48380 RNU6-114P-201ENST00000384704 105 ntBASIC2.38□□□□□ -2.03
RFX3P48380 MIR34A-201ENST00000385130 110 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AL139039.1-201ENST00000401900 692 ntBASIC2.38□□□□□ -2.03
RFX3P48380 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
RFX3P48380 RNA5SP184-201ENST00000411071 108 ntBASIC2.38□□□□□ -2.03
RFX3P48380 NANOGP5-201ENST00000424456 877 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC098614.2-201ENST00000426040 255 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC063976.3-201ENST00000426849 329 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC084290.1-201ENST00000434995 374 ntBASIC2.38□□□□□ -2.03
RFX3P48380 RPS25P9-201ENST00000435591 252 ntBASIC2.38□□□□□ -2.03
RFX3P48380 CR769767.1-201ENST00000436337 346 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AL445687.1-201ENST00000439946 251 ntBASIC2.38□□□□□ -2.03
RFX3P48380 PAXBP1P1-201ENST00000449315 447 ntBASIC2.38□□□□□ -2.03
RFX3P48380 RPL12P25-201ENST00000455592 494 ntBASIC2.38□□□□□ -2.03
RFX3P48380 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.38□□□□□ -2.03
RFX3P48380 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC2.38□□□□□ -2.03
RFX3P48380 UBE2V1P12-201ENST00000503954 474 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC114786.4-201ENST00000508771 728 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC010587.2-201ENST00000511727 448 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC114797.1-201ENST00000514003 728 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC025881.1-201ENST00000518851 512 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.38□□□□□ -2.03
RFX3P48380 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
RFX3P48380 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
RFX3P48380 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.38□□□□□ -2.03
RFX3P48380 MIR3117-201ENST00000584034 78 ntBASIC2.38□□□□□ -2.03
RFX3P48380 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.38□□□□□ -2.03
RFX3P48380 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.38□□□□□ -2.03
RFX3P48380 AC136601.2-201ENST00000604356 474 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AL592221.1-201ENST00000605266 382 ntBASIC2.38□□□□□ -2.03
RFX3P48380 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.38□□□□□ -2.03
RFX3P48380 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.38□□□□□ -2.03
RFX3P48380 FTX_3.1-201ENST00000610451 147 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC097478.2-201ENST00000610572 514 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC034102.8-201ENST00000615146 484 ntBASIC2.38□□□□□ -2.03
RFX3P48380 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.38□□□□□ -2.03
RFX3P48380 AC010608.3-201ENST00000625048 527 ntBASIC2.38□□□□□ -2.03
RFX3P48380 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.38□□□□□ -2.03
RFX3P48380 AC135776.4-201ENST00000624300 1904 ntBASIC2.38□□□□□ -2.03
RFX3P48380 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
RFX3P48380 CCT4P2-201ENST00000233836 1548 ntBASIC2.37□□□□□ -2.03
RFX3P48380 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
RFX3P48380 DDX10P1-201ENST00000448545 1933 ntBASIC2.37□□□□□ -2.03
RFX3P48380 RNA5SP393-201ENST00000363423 117 ntBASIC2.37□□□□□ -2.03
RFX3P48380 RNU6-140P-201ENST00000384566 108 ntBASIC2.37□□□□□ -2.03
RFX3P48380 RNU6-1072P-201ENST00000384703 107 ntBASIC2.37□□□□□ -2.03
RFX3P48380 RNU6-443P-201ENST00000384780 107 ntBASIC2.37□□□□□ -2.03
RFX3P48380 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
RFX3P48380 RNU6-754P-201ENST00000391166 107 ntBASIC2.37□□□□□ -2.03
RFX3P48380 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.37□□□□□ -2.03
RFX3P48380 RNU2-33P-201ENST00000410344 192 ntBASIC2.37□□□□□ -2.03
RFX3P48380 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.37□□□□□ -2.03
RFX3P48380 AC023141.4-201ENST00000412031 328 ntBASIC2.37□□□□□ -2.03
RFX3P48380 AC019097.1-201ENST00000424783 735 ntBASIC2.37□□□□□ -2.03
RFX3P48380 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.37□□□□□ -2.03
RFX3P48380 SUMO1P4-201ENST00000429430 302 ntBASIC2.37□□□□□ -2.03
RFX3P48380 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.37□□□□□ -2.03
RFX3P48380 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.37□□□□□ -2.03
RFX3P48380 COX7BP2-201ENST00000437976 242 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms