Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 EIF4EP1-201ENST00000422311 642 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AL645608.4-201ENST00000423619 154 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 RPEP3-201ENST00000425462 676 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA3O43365 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA3O43365 HSPD1P21-201ENST00000436541 245 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.78□□□□□ -1.8
HOXA3O43365 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXA3O43365 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA3O43365 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA3O43365 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA3O43365 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA3O43365 SNORD108-201ENST00000459332 71 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC010285.1-201ENST00000470580 392 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC103987.1-201ENST00000473394 348 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC092451.1-201ENST00000480211 153 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 SUMO2P6-201ENST00000505273 288 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA3O43365 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA3O43365 RNA5SP384-201ENST00000516615 116 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 RNU6-699P-201ENST00000517081 110 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC087369.1-201ENST00000520775 996 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA3O43365 AP003122.3-201ENST00000526316 255 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA3O43365 AP001781.1-201ENST00000530977 207 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC023442.1-201ENST00000531247 422 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC3.78□□□□□ -1.8
HOXA3O43365 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA3O43365 ATP5J2P6-201ENST00000565203 266 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC002545.1-201ENST00000592511 181 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 SNRPGP15-201ENST00000600149 222 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 ELOCP5-201ENST00000604924 333 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AL356218.2-201ENST00000605264 187 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXA3O43365 AC006157.1-201ENST00000611750 366 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC010205.1-201ENST00000616668 449 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXA3O43365 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXA3O43365 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA3O43365 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA3O43365 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA3O43365 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA3O43365 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA3O43365 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
HOXA3O43365 ZNF137P-201ENST00000456718 1920 ntBASIC3.78□□□□□ -1.81
HOXA3O43365 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
HOXA3O43365 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA3O43365 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA3O43365 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA3O43365 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA3O43365 AP001273.1-201ENST00000624493 3152 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA3O43365 Y_RNA.151-201ENST00000363566 112 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AC068538.1-201ENST00000376856 336 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 RNU6-196P-201ENST00000384315 107 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 RNY1P14-201ENST00000384426 108 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 Z98745.1-201ENST00000402553 494 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 U3.35-201ENST00000408405 208 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 RNU4-6P-201ENST00000410804 122 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 ELOCP19-201ENST00000411919 318 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA3O43365 CYCSP33-201ENST00000414485 327 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 HMGB1P9-201ENST00000429856 646 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AC097713.2-201ENST00000430199 356 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA3O43365 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA3O43365 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 NOTCH2P1-201ENST00000443481 624 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 BTF3P15-201ENST00000455606 336 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 RNU7-187P-201ENST00000458985 68 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 IGKV2D-23-201ENST00000518179 286 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 TOMM20P2-201ENST00000540082 421 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA3O43365 AL117187.1-201ENST00000555482 181 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AC084783.1-201ENST00000565846 910 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 AC010653.1-201ENST00000571108 881 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA3O43365 MIR1273C-201ENST00000578669 77 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA3O43365 AC005014.2-201ENST00000607795 599 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 AC005344.1-201ENST00000613391 459 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 MIR8069-1-201ENST00000616627 86 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 MIR8069-2-201ENST00000621412 86 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 MIR6830-201ENST00000636015 70 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 ZNF807-201ENST00000328088 1707 ntBASIC3.77□□□□□ -1.81
HOXA3O43365 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA3O43365 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA3O43365 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA3O43365 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA3O43365 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA3O43365 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 377.8 ms