Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ZNF519P1-201ENST00000449011 1626 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC88BA6NC98 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.73□□□□□ -2.13
CCDC88BA6NC98 AC110792.3-201ENST00000595906 1614 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 Y_RNA.295-201ENST00000364918 102 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 RNU6-1072P-201ENST00000384703 107 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 RNU6-443P-201ENST00000384780 107 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC88BA6NC98 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC88BA6NC98 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC88BA6NC98 RPL37P6-202ENST00000464216 403 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 HMGB1P38-201ENST00000490557 577 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 RNU6-405P-201ENST00000516637 110 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 RNU6-467P-201ENST00000517027 110 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC88BA6NC98 AL162373.1-201ENST00000620433 407 ntBASIC1.73□□□□□ -2.13
CCDC88BA6NC98 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC88BA6NC98 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC88BA6NC98 AL606495.1-201ENST00000422100 813 ntBASIC1.72□□□□□ -2.13
CCDC88BA6NC98 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC88BA6NC98 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.72□□□□□ -2.13
CCDC88BA6NC98 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC88BA6NC98 HNRNPDLP3-201ENST00000456745 380 ntBASIC1.72□□□□□ -2.13
CCDC88BA6NC98 AC105914.1-201ENST00000511798 226 ntBASIC1.72□□□□□ -2.13
CCDC88BA6NC98 RNU6-943P-201ENST00000516960 98 ntBASIC1.72□□□□□ -2.13
CCDC88BA6NC98 HMGB1P46-201ENST00000520062 610 ntBASIC1.72□□□□□ -2.13
CCDC88BA6NC98 CYP3A137P-201ENST00000562436 69 ntBASIC1.72□□□□□ -2.13
CCDC88BA6NC98 AC008749.1-201ENST00000597650 306 ntBASIC1.72□□□□□ -2.13
CCDC88BA6NC98 AL355816.1-201ENST00000607951 118 ntBASIC1.72□□□□□ -2.13
CCDC88BA6NC98 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.72□□□□□ -2.13
CCDC88BA6NC98 RNF6P1-201ENST00000444889 1784 ntBASIC1.71□□□□□ -2.14
CCDC88BA6NC98 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
CCDC88BA6NC98 AL445687.1-201ENST00000439946 251 ntBASIC1.71□□□□□ -2.14
CCDC88BA6NC98 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.71□□□□□ -2.14
CCDC88BA6NC98 LDHBP3-201ENST00000514909 822 ntBASIC1.71□□□□□ -2.14
CCDC88BA6NC98 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC88BA6NC98 AC135178.6-201ENST00000605314 398 ntBASIC1.71□□□□□ -2.14
CCDC88BA6NC98 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC1.71□□□□□ -2.14
CCDC88BA6NC98 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.71□□□□□ -2.14
CCDC88BA6NC98 SNORA38-201ENST00000363946 132 ntBASIC1.7□□□□□ -2.14
CCDC88BA6NC98 AC068050.1-201ENST00000394891 380 ntBASIC1.7□□□□□ -2.14
CCDC88BA6NC98 AC092745.2-202ENST00000411880 369 ntBASIC1.7□□□□□ -2.14
CCDC88BA6NC98 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC88BA6NC98 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC88BA6NC98 AC091932.3-201ENST00000624223 323 ntBASIC1.7□□□□□ -2.14
CCDC88BA6NC98 MIR17-201ENST00000385012 84 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AL513343.1-201ENST00000451818 792 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC88BA6NC98 OR5BM1P-201ENST00000512021 366 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC88BA6NC98 RPL21P5-201ENST00000554662 472 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AC025048.6-202ENST00000627667 438 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AL442644.1-201ENST00000454390 3105 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 RNU6-335P-201ENST00000364563 113 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 Y_RNA.393-201ENST00000383936 102 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 SNORD23.1-201ENST00000408212 104 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 OR6C66P-201ENST00000414917 930 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC88BA6NC98 ARL5AP2-201ENST00000444698 533 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AC105252.1-201ENST00000503089 286 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC88BA6NC98 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AC233266.2-201ENST00000567067 528 ntBASIC1.69□□□□□ -2.14
CCDC88BA6NC98 AC007560.1-201ENST00000426912 237 ntBASIC1.68□□□□□ -2.14
CCDC88BA6NC98 AL591212.2-201ENST00000433923 257 ntBASIC1.68□□□□□ -2.14
CCDC88BA6NC98 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
CCDC88BA6NC98 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.68□□□□□ -2.14
CCDC88BA6NC98 AL590282.1-201ENST00000610379 1136 ntBASIC1.68□□□□□ -2.14
CCDC88BA6NC98 AL449363.1-201ENST00000617815 186 ntBASIC1.68□□□□□ -2.14
CCDC88BA6NC98 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AL034374.1-201ENST00000406329 351 ntBASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AC244033.1-201ENST00000426826 870 ntBASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC88BA6NC98 ARL5AP3-201ENST00000439327 386 ntBASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC88BA6NC98 TPRKBP1-201ENST00000456243 481 ntBASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AC010285.1-201ENST00000470580 392 ntBASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AC096745.1-201ENST00000509945 370 ntBASIC1.67□□□□□ -2.14
CCDC88BA6NC98 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC88BA6NC98 RN7SL793P-201ENST00000583259 296 ntBASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC88BA6NC98 MIR4496-201ENST00000635896 61 ntBASIC1.67□□□□□ -2.14
CCDC88BA6NC98 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC88BA6NC98 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC88BA6NC98 AL589994.1-201ENST00000404962 340 ntBASIC1.66□□□□□ -2.14
CCDC88BA6NC98 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC88BA6NC98 LAMTOR3P1-201ENST00000428620 370 ntBASIC1.66□□□□□ -2.14
CCDC88BA6NC98 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.66□□□□□ -2.14
CCDC88BA6NC98 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC88BA6NC98 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC88BA6NC98 U73023.1-201ENST00000603134 700 ntBASIC1.66□□□□□ -2.14
CCDC88BA6NC98 MIR98-201ENST00000606724 119 ntBASIC1.66□□□□□ -2.14
CCDC88BA6NC98 AC009902.3-201ENST00000606235 2172 ntBASIC1.66□□□□□ -2.14
CCDC88BA6NC98 Z86062.1-201ENST00000406773 777 ntBASIC1.65□□□□□ -2.15
CCDC88BA6NC98 RNU2-32P-201ENST00000411193 191 ntBASIC1.65□□□□□ -2.15
CCDC88BA6NC98 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms