Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL355497.1-201ENST00000406262 551 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
USF3Q68DE3 AL512504.1-201ENST00000415494 778 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 AL590233.1-201ENST00000430017 456 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 AC005297.2-201ENST00000450430 606 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 AC234775.1-201ENST00000454247 670 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 AC023790.1-201ENST00000482174 347 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 LTV1P1-201ENST00000510683 1237 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.03□□□□□ -2.24
USF3Q68DE3 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC1.03□□□□□ -2.24
USF3Q68DE3 AL590282.1-201ENST00000610379 1136 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 FAM157B-203ENST00000639350 358 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 AC092745.2-202ENST00000411880 369 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 SRIP3-201ENST00000413200 219 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 AC004022.2-201ENST00000413824 193 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 AC244033.1-201ENST00000426826 870 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.03□□□□□ -2.25
USF3Q68DE3 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.03□□□□□ -2.25
USF3Q68DE3 MTND3P24-201ENST00000506306 329 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 RNU6-1073P-201ENST00000517182 106 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 AL161734.1-201ENST00000609720 557 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 AC068831.7-201ENST00000616954 363 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 MIR6788-201ENST00000618842 66 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 AL133370.2-201ENST00000619934 439 ntBASIC1.03□□□□□ -2.25
USF3Q68DE3 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.03□□□□□ -2.25
USF3Q68DE3 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.02□□□□□ -2.25
USF3Q68DE3 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.02□□□□□ -2.25
USF3Q68DE3 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC1.02□□□□□ -2.25
USF3Q68DE3 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.02□□□□□ -2.25
USF3Q68DE3 Y_RNA.62-201ENST00000362840 99 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 SNORA46.1-201ENST00000391069 153 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 AL033519.2-201ENST00000403958 392 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 TRIM60P13-201ENST00000432350 1283 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 AL078601.1-201ENST00000444542 271 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 BMI1P1-201ENST00000445879 941 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.02□□□□□ -2.25
USF3Q68DE3 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
USF3Q68DE3 AL359273.1-201ENST00000510918 627 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.02□□□□□ -2.25
USF3Q68DE3 AP004371.1-201ENST00000525240 214 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.02□□□□□ -2.25
USF3Q68DE3 NBEAP1-201ENST00000554452 979 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.02□□□□□ -2.25
USF3Q68DE3 AC245036.5-201ENST00000596330 847 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 AC011472.4-201ENST00000615848 491 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 AC139769.3-201ENST00000618383 175 ntBASIC1.02□□□□□ -2.25
USF3Q68DE3 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
USF3Q68DE3 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.01□□□□□ -2.25
USF3Q68DE3 RNU6-317P-201ENST00000384031 107 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 RNA5SP252-201ENST00000391131 119 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC1.01□□□□□ -2.25
USF3Q68DE3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.01□□□□□ -2.25
USF3Q68DE3 ELOCP11-201ENST00000436690 332 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 AC009296.1-201ENST00000443146 155 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 ELOCP16-201ENST00000444494 332 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 RPS24P6-201ENST00000452670 400 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 SNRPFP3-201ENST00000457792 225 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.01□□□□□ -2.25
USF3Q68DE3 AC108157.1-201ENST00000510511 539 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.01□□□□□ -2.25
USF3Q68DE3 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.01□□□□□ -2.25
USF3Q68DE3 AP000560.1-201ENST00000624150 1937 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.01□□□□□ -2.25
USF3Q68DE3 SNORA18.2-201ENST00000383865 132 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 RNU6-203P-201ENST00000384038 104 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 PTGES3P2-201ENST00000407942 482 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.01□□□□□ -2.25
USF3Q68DE3 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.01□□□□□ -2.25
USF3Q68DE3 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
USF3Q68DE3 RPS29P28-201ENST00000446439 141 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 AC010285.1-201ENST00000470580 392 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 SYPL1P1-201ENST00000473622 768 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 AC087343.1-201ENST00000477341 475 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 AC004062.1-201ENST00000509926 645 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 GLYCAM1-201ENST00000546596 285 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 MIR4295-201ENST00000585286 85 ntBASIC1.01□□□□□ -2.25
USF3Q68DE3 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC1.01□□□□□ -2.25
USF3Q68DE3 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC1.01□□□□□ -2.25
USF3Q68DE3 SNORD23.1-201ENST00000408212 104 ntBASIC1□□□□□ -2.25
USF3Q68DE3 RNU2-21P-201ENST00000410368 188 ntBASIC1□□□□□ -2.25
USF3Q68DE3 RNU6-193P-201ENST00000410977 107 ntBASIC1□□□□□ -2.25
USF3Q68DE3 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1□□□□□ -2.25
USF3Q68DE3 ARF4P4-201ENST00000439608 520 ntBASIC1□□□□□ -2.25
USF3Q68DE3 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1□□□□□ -2.25
USF3Q68DE3 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC1□□□□□ -2.25
USF3Q68DE3 RNU6-319P-201ENST00000516025 108 ntBASIC1□□□□□ -2.25
USF3Q68DE3 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1□□□□□ -2.25
USF3Q68DE3 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC1□□□□□ -2.25
USF3Q68DE3 SNRPGP16-201ENST00000533275 226 ntBASIC1□□□□□ -2.25
USF3Q68DE3 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC1□□□□□ -2.25
USF3Q68DE3 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1□□□□□ -2.25
USF3Q68DE3 MIR98-201ENST00000606724 119 ntBASIC1□□□□□ -2.25
USF3Q68DE3 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1□□□□□ -2.25
USF3Q68DE3 AC009541.1-201ENST00000438279 2662 ntBASIC1□□□□□ -2.25
USF3Q68DE3 AC007342.9-201ENST00000623877 1385 ntBASIC1□□□□□ -2.25
USF3Q68DE3 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC1□□□□□ -2.25
USF3Q68DE3 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC1□□□□□ -2.25
USF3Q68DE3 snoU13.7-201ENST00000459220 104 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms