Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AL049734.2-201ENST00000441066 616 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 PIGFP3-201ENST00000441918 722 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AP1S2P1-201ENST00000457344 379 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 RNU7-23P-201ENST00000459465 62 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 KC877373.1-201ENST00000479066 408 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 RPS15AP36-201ENST00000492022 382 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC105185.1-201ENST00000518705 535 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 MTCO2P15-201ENST00000532655 656 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC079600.2-201ENST00000550076 130 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 DUXAP1-201ENST00000556632 463 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC010546.1-201ENST00000569391 485 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC010297.1-201ENST00000623948 149 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC006927.4-201ENST00000639187 543 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
CCDC40Q4G0X9 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
CCDC40Q4G0X9 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.9□□□□□ -1.94
CCDC40Q4G0X9 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.9□□□□□ -1.94
CCDC40Q4G0X9 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.94
CCDC40Q4G0X9 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.9□□□□□ -1.94
CCDC40Q4G0X9 RNU6-223P-201ENST00000362830 107 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 RNU6-723P-201ENST00000383973 107 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 RNU6-217P-201ENST00000384164 104 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 MIR767-201ENST00000390228 109 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 RNU2-25P-201ENST00000411041 191 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 HMGN2P35-201ENST00000412164 270 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AL445669.1-201ENST00000426743 755 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 ST13P20-201ENST00000447996 1065 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 RPS20P22-201ENST00000473700 357 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 RPL31P41-201ENST00000477967 372 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 RPL23AP70-201ENST00000483361 460 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 GTF2IP9-201ENST00000502460 301 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AC103810.1-201ENST00000579873 453 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AF038458.1-201ENST00000588406 262 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AC011458.1-201ENST00000604034 617 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AL450336.1-201ENST00000605180 586 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AC024933.1-201ENST00000608472 348 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 BX664608.1-201ENST00000610519 487 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 SDR42E1P2-201ENST00000614861 481 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 AL356596.1-201ENST00000624230 379 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 MTND1P37-201ENST00000636562 264 ntBASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC40Q4G0X9 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 MIR513B-201ENST00000385136 84 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 RNU2-33P-201ENST00000410344 192 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AL513331.1-201ENST00000411908 397 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC013410.2-201ENST00000422627 201 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 WASF1P1-201ENST00000447560 1131 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 RPL23AP35-201ENST00000451906 501 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 CACYBPP2-201ENST00000453625 678 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC087588.1-201ENST00000462203 316 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 RNA5SP367-201ENST00000516557 118 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 RN7SKP40-201ENST00000517211 242 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC090136.1-201ENST00000520009 240 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC087465.1-201ENST00000560574 245 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC136618.2-201ENST00000575091 400 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC002545.1-201ENST00000592511 181 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AL161729.4-201ENST00000604650 476 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC097468.3-201ENST00000607956 456 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC092106.3-201ENST00000611308 722 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 AC022960.3-201ENST00000619794 441 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 MTND5P33-201ENST00000571250 1450 ntBASIC2.89□□□□□ -1.95
CCDC40Q4G0X9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 233.1 ms