Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXA4Q00056 AC074085.1-201ENST00000413598 418 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA4Q00056 RSL24D1P6-201ENST00000426934 401 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 MTATP6P4-201ENST00000427725 675 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AL669831.1-202ENST00000428504 417 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 GTF2IP13-201ENST00000438487 386 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 BRK1P2-201ENST00000442875 223 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA4Q00056 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA4Q00056 RPL23AP81-201ENST00000455252 467 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 Y_RNA.635-201ENST00000459041 101 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 RPS23P7-201ENST00000466210 444 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AC027575.1-201ENST00000481064 460 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AC068587.1-201ENST00000483613 781 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA4Q00056 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA4Q00056 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA4Q00056 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA4Q00056 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXA4Q00056 GMPSP1-201ENST00000514075 579 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 RNA5SP454-201ENST00000517231 127 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 MRPL49P2-201ENST00000521066 465 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA4Q00056 AC135001.1-201ENST00000544546 283 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA4Q00056 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA4Q00056 MTCO3P13-201ENST00000577757 781 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 MIR4790-201ENST00000577799 79 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA4Q00056 BNIP3P22-201ENST00000593399 556 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AL359547.2-201ENST00000615810 418 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.53□□□□□ -1.84
HOXA4Q00056 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
HOXA4Q00056 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
HOXA4Q00056 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA4Q00056 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA4Q00056 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA4Q00056 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA4Q00056 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA4Q00056 PRO1804-201ENST00000623780 2050 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 MIR369-201ENST00000362155 70 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 Y_RNA.315-201ENST00000365117 102 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 RNA5SP235-201ENST00000365411 114 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 SNORA62-201ENST00000365493 153 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 RNU6-190P-201ENST00000384154 102 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 MIR450B-201ENST00000401182 78 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AL445189.1-201ENST00000405722 338 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 MTCO2P27-201ENST00000420740 428 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA4Q00056 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA4Q00056 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 AC091390.1-201ENST00000433904 331 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.52□□□□□ -1.85
HOXA4Q00056 HLA-N-201ENST00000437516 135 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA4Q00056 AC107399.1-201ENST00000451226 265 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 CEACAMP10-202ENST00000495431 496 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 MTND5P5-201ENST00000503764 376 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA4Q00056 AC009901.1-201ENST00000506703 541 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 HIGD1AP13-201ENST00000509878 289 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA4Q00056 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 RN7SKP24-201ENST00000515888 284 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 SNORA31.3-201ENST00000516029 96 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 RNU2-69P-201ENST00000516061 100 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 RNU6-677P-201ENST00000516914 101 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA4Q00056 COPS8P3-201ENST00000526024 482 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 APOOP3-201ENST00000536787 586 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 DYNLL1P4-201ENST00000549314 266 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AC090115.3-201ENST00000553218 849 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AC025884.1-201ENST00000556034 378 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 AC090971.5-201ENST00000621102 293 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 MTND5P42-201ENST00000637720 498 ntBASIC3.52□□□□□ -1.85
HOXA4Q00056 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA4Q00056 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA4Q00056 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA4Q00056 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA4Q00056 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA4Q00056 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA4Q00056 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA4Q00056 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.51□□□□□ -1.85
HOXA4Q00056 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA4Q00056 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA4Q00056 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA4Q00056 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC3.51□□□□□ -1.85
HOXA4Q00056 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
HOXA4Q00056 Y_RNA.212-201ENST00000364177 102 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 RNA5SP130-201ENST00000364431 114 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 SNORD42.2-201ENST00000365570 69 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 SNORD116-11-201ENST00000383882 92 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms