Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MIR3200-201ENST00000580767 85 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.55□□□□□ -2
SKA3Q8IX90 AC008751.2-201ENST00000597885 980 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AC068313.1-201ENST00000604028 1008 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 Z99289.3-201ENST00000605586 594 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AC090132.2-201ENST00000615881 347 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AC019226.1-201ENST00000625666 515 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 MIR4275-201ENST00000636486 87 ntBASIC2.55□□□□□ -2
SKA3Q8IX90 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.54□□□□□ -2
SKA3Q8IX90 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.54□□□□□ -2
SKA3Q8IX90 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.54□□□□□ -2
SKA3Q8IX90 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.54□□□□□ -2
SKA3Q8IX90 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 MTND5P33-201ENST00000571250 1450 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.54□□□□□ -2
SKA3Q8IX90 Y_RNA.97-201ENST00000363094 102 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 RNU1-140P-201ENST00000365040 165 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 RNU6-851P-201ENST00000384565 107 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 MIR128-1-201ENST00000384921 82 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 U8.14-201ENST00000390843 143 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 RNU6-1197P-201ENST00000391183 107 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.54□□□□□ -2
SKA3Q8IX90 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.54□□□□□ -2
SKA3Q8IX90 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.54□□□□□ -2
SKA3Q8IX90 AC092573.2-201ENST00000434546 243 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 RPL35AP22-201ENST00000436855 335 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 AL590664.1-201ENST00000448065 339 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 ATG12P2-201ENST00000456830 416 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AP1S2P1-201ENST00000457344 379 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AL031183.1-201ENST00000457667 207 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AC135721.1-201ENST00000497954 479 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AC083906.5-201ENST00000503722 328 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.54□□□□□ -2
SKA3Q8IX90 TTC39CP1-201ENST00000512513 755 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.54□□□□□ -2
SKA3Q8IX90 AC107016.2-201ENST00000547968 190 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.54□□□□□ -2
SKA3Q8IX90 TPMTP1-201ENST00000592307 737 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 MIR6076-201ENST00000617521 113 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 SNHG22-203ENST00000617833 660 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 Z99129.2-201ENST00000619967 314 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 AL356266.1-201ENST00000623311 483 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.54□□□□□ -2
SKA3Q8IX90 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.54□□□□□ -2
SKA3Q8IX90 DDX10P1-201ENST00000448545 1933 ntBASIC2.54□□□□□ -2
SKA3Q8IX90 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.54□□□□□ -2
SKA3Q8IX90 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SKA3Q8IX90 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.53□□□□□ -2
SKA3Q8IX90 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.53□□□□□ -2
SKA3Q8IX90 ASNSP3-201ENST00000451989 1306 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.53□□□□□ -2
SKA3Q8IX90 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.53□□□□□ -2
SKA3Q8IX90 RNU1-35P-201ENST00000362782 153 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 SNORA44-201ENST00000384584 132 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 SNORA1.3-201ENST00000384676 136 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 MTND1P21-201ENST00000412991 285 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 EEF1A1P41-201ENST00000414667 207 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 AC018630.2-202ENST00000422992 927 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 MTND5P25-201ENST00000430499 799 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.53□□□□□ -2
SKA3Q8IX90 UBE2D3P1-201ENST00000436669 444 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 LARP1BP3-201ENST00000437229 869 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 CYCSP32-201ENST00000440548 321 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.53□□□□□ -2
SKA3Q8IX90 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.53□□□□□ -2
SKA3Q8IX90 MTND2P24-201ENST00000453434 806 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 AC027673.1-201ENST00000456245 405 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.53□□□□□ -2
SKA3Q8IX90 AC090525.1-201ENST00000479116 478 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.53□□□□□ -2
SKA3Q8IX90 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.53□□□□□ -2
SKA3Q8IX90 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.53□□□□□ -2
SKA3Q8IX90 SCARNA15.2-201ENST00000516409 127 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.53□□□□□ -2
SKA3Q8IX90 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.53□□□□□ -2
SKA3Q8IX90 HMGN1P28-201ENST00000521340 364 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.53□□□□□ -2
SKA3Q8IX90 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.53□□□□□ -2
SKA3Q8IX90 CASP1P1-201ENST00000526345 212 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.53□□□□□ -2
SKA3Q8IX90 AC124947.2-202ENST00000552735 133 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 AC007954.1-201ENST00000554198 494 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.53□□□□□ -2
SKA3Q8IX90 DNAJC8P1-201ENST00000554535 372 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.53□□□□□ -2
SKA3Q8IX90 AC138761.3-201ENST00000579993 334 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 AC013553.2-201ENST00000604244 589 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 AC004223.4-201ENST00000612426 332 ntBASIC2.53□□□□□ -2
SKA3Q8IX90 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms