Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 TRAV28-201ENST00000557548 323 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AL357094.1-201ENST00000603845 844 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AL136363.1-201ENST00000605349 337 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC092953.2-201ENST00000608000 699 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC007349.4-201ENST00000608114 532 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 TUG1_2.1-201ENST00000614234 87 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC40Q4G0X9 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RNU6-741P-201ENST00000383889 107 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RNU6-432P-201ENST00000384196 109 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RNU6-83P-201ENST00000384568 112 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 MIR592-201ENST00000384959 97 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 MIR627-201ENST00000384979 97 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 MIR483-201ENST00000385070 76 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AL109755.1-201ENST00000401791 649 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RN7SKP266-201ENST00000410232 287 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RNA5SP21-201ENST00000410917 96 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RN7SKP140-201ENST00000411196 284 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC092047.1-201ENST00000424997 240 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RPL35AP22-201ENST00000436855 335 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RPS24P13-201ENST00000442520 397 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 DDX3P2-201ENST00000446138 111 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 TPT1P14-201ENST00000448018 505 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC027673.1-201ENST00000456245 405 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC034222.1-201ENST00000494052 532 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC080014.1-201ENST00000496877 1201 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AIG1P1-201ENST00000503376 148 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC091951.3-201ENST00000504093 246 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC022447.3-201ENST00000506865 495 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 OR5BM1P-201ENST00000512021 366 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 UBTFL10-201ENST00000528532 562 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC023538.1-201ENST00000534576 736 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 MTND4P33-201ENST00000556706 766 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC060771.1-201ENST00000582031 164 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 TPMTP1-201ENST00000592307 737 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AL451007.1-201ENST00000595491 289 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 RNU6-88P-201ENST00000606801 100 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AC010133.1-201ENST00000615809 842 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 UCA1.1-201ENST00000620952 75 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 AL078595.3-201ENST00000623815 1166 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 PCMTD1P7-201ENST00000634506 357 ntBASIC2.93□□□□□ -1.94
CCDC40Q4G0X9 ZNF833P-201ENST00000424938 1494 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 SNORA48.2-201ENST00000390926 124 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 RNA5SP210-201ENST00000391034 120 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 SSR1P2-201ENST00000415208 787 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 UBE2FP1-201ENST00000416536 447 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC007919.1-201ENST00000429380 217 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC009296.1-201ENST00000443146 155 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC011825.1-201ENST00000484967 388 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC100870.1-201ENST00000522035 505 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC138761.3-201ENST00000579993 334 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC245884.10-201ENST00000597355 337 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AL391001.1-201ENST00000602747 715 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AL161734.1-201ENST00000609720 557 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC093838.1-201ENST00000613014 469 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AL137790.1-201ENST00000634283 177 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AL365361.1-201ENST00000566942 3481 ntBASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC40Q4G0X9 AC022336.2-201ENST00000568966 2538 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 RNU6-157P-201ENST00000383957 107 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 TXNP7-201ENST00000406296 293 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 RNU6-584P-201ENST00000410350 95 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AL451054.2-201ENST00000420896 202 ntBASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC40Q4G0X9 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms