Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-7-201ENST00000364784 107 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 RNU6-8-201ENST00000365467 107 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 RNU6-1042P-201ENST00000384204 107 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 DLGAP5P1-201ENST00000430307 464 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC119618.1-201ENST00000434191 222 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 SNORA71B-202ENST00000439232 272 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 RPL32P28-201ENST00000443577 397 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AL359385.1-201ENST00000456509 365 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC011825.1-201ENST00000484967 388 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 TRBV12-2-201ENST00000489763 344 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 RN7SL504P-201ENST00000494496 287 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AL359273.1-201ENST00000510918 627 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 PHBP14-201ENST00000512887 367 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 RNA5SP337-201ENST00000517007 109 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC123904.3-201ENST00000547218 814 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AL121576.1-201ENST00000556055 276 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 RPL12P50-201ENST00000603116 116 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC245014.2-201ENST00000603689 287 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC246785.4-201ENST00000605374 287 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC012557.2-201ENST00000605919 418 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC103710.2-201ENST00000609912 942 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 Z99129.1-201ENST00000612510 255 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC005332.10-201ENST00000612725 619 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC004696.1-201ENST00000614345 607 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC110801.1-201ENST00000623590 212 ntBASIC3.46□□□□□ -1.86
COL28A1Q2UY09 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL28A1Q2UY09 AC002546.1-201ENST00000588041 2504 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 Y_RNA.582-201ENST00000391023 95 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AL359634.1-202ENST00000404721 284 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 RPL21P109-201ENST00000422213 475 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 NDUFB4P7-201ENST00000423198 363 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC010975.2-201ENST00000427781 588 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 USP9YP14-201ENST00000430663 563 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 ARL2BPP6-201ENST00000512757 439 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 RNA5SP341-201ENST00000516261 117 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 SNORA70.16-201ENST00000516390 95 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 Vault.3-201ENST00000516676 95 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 RN7SKP60-201ENST00000516985 239 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 RNU6-430P-201ENST00000517078 107 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 SUMO2P20-201ENST00000520803 283 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AP003072.2-201ENST00000527756 676 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC034105.3-201ENST00000565294 442 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 RPL23AP84-201ENST00000571193 464 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 MIR4425-201ENST00000580572 84 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AF038458.1-201ENST00000588406 262 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC091805.2-201ENST00000603848 235 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC091834.1-201ENST00000614543 472 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC110994.2-201ENST00000635481 492 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 AC118273.1-201ENST00000525324 3006 ntBASIC3.45□□□□□ -1.86
COL28A1Q2UY09 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
COL28A1Q2UY09 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
COL28A1Q2UY09 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 137.9 ms