Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 RPL7P46-201ENST00000425129 740 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 RPL23AP22-201ENST00000437556 453 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 RPL7P5-201ENST00000471472 736 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC117440.1-201ENST00000474107 571 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC009812.2-201ENST00000517657 457 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 DNAJC8P1-201ENST00000554535 372 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 OR4H12P-201ENST00000556269 907 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC092354.1-201ENST00000606057 376 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AP000254.1-201ENST00000609934 520 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AL355472.4-201ENST00000610233 626 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 AC112204.3-201ENST00000623822 332 ntBASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
CPSF3Q9UKF6 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AL035425.3-201ENST00000564206 4996 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 Y_RNA.46-201ENST00000362695 102 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 U3.6-201ENST00000363622 211 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 SNORA36C-201ENST00000384289 132 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 MIR19A-201ENST00000384878 82 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 RNU6-754P-201ENST00000391166 107 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 RPS20P2-201ENST00000402520 389 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 MTCYBP36-201ENST00000404146 440 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 MTND1P21-201ENST00000412991 285 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC012498.1-201ENST00000424037 437 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 DPPA2P1-201ENST00000428060 556 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC104472.2-201ENST00000469035 601 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 RPS29P2-201ENST00000479278 136 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC055855.1-201ENST00000489563 579 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC135721.1-201ENST00000497954 479 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC008088.1-201ENST00000580993 280 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 ATP5A1P2-202ENST00000616464 443 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC104010.1-201ENST00000616889 150 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC007318.2-201ENST00000620999 243 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC019226.1-201ENST00000625666 515 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AC091564.4-201ENST00000533934 2194 ntBASIC3.28□□□□□ -1.88
CPSF3Q9UKF6 AL138713.1-201ENST00000624026 2130 ntBASIC3.28□□□□□ -1.89
CPSF3Q9UKF6 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.89
CPSF3Q9UKF6 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 RNU6-799P-201ENST00000363567 107 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 RNY3P9-201ENST00000384727 106 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 MTND1P30-201ENST00000441241 901 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC118469.1-201ENST00000442943 488 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AL592447.1-201ENST00000447592 540 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC125238.1-201ENST00000448842 249 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 HSPE1P6-201ENST00000479457 291 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 RNU6-1003P-201ENST00000517099 105 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC005951.1-201ENST00000576706 485 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 TPMTP1-201ENST00000592307 737 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 HSPE1P7-201ENST00000604681 321 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AL031775.1-201ENST00000607014 887 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC091931.1-201ENST00000623488 728 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC093591.3-201ENST00000634516 308 ntBASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.27□□□□□ -1.89
CPSF3Q9UKF6 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 238.3 ms