Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
CLIP2Q9UDT6 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
CLIP2Q9UDT6 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.2□□□□□ -1.9
CLIP2Q9UDT6 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 RNU4-28P-201ENST00000364739 141 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 RNU1-109P-201ENST00000383960 147 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 MIR493-201ENST00000385254 89 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AL356057.3-201ENST00000402607 340 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 RPL27AP8-201ENST00000424277 446 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 ARL5AP4-201ENST00000430731 512 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 RPS6P15-201ENST00000431996 751 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 RPL36AP6-201ENST00000435770 321 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 SDCBPP1-201ENST00000440192 890 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 EEF1A1P39-201ENST00000440791 250 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AP000936.2-201ENST00000447151 681 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AC009901.1-201ENST00000506703 541 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 XKRY-201ENST00000510392 1100 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 RNU6-826P-201ENST00000516827 104 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 SNORA31.21-201ENST00000517180 77 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AC103783.1-201ENST00000520506 373 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 OR4K7P-201ENST00000580232 945 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 PIGPP4-201ENST00000584447 307 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AC019159.1-201ENST00000605094 187 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AC078883.4-201ENST00000623218 367 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 AC002064.3-201ENST00000623448 346 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 CRYM-AS1-204ENST00000637983 556 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 MTND4P5-201ENST00000435821 1374 ntBASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLIP2Q9UDT6 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 MIR449A-201ENST00000362113 91 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 MIR26A1-201ENST00000362205 77 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 MIR34A-201ENST00000385130 110 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AL031679.1-201ENST00000400616 525 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 RNU2-43P-201ENST00000410306 190 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 MTND2P18-201ENST00000419962 1030 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC112220.1-201ENST00000434628 355 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 RAC1P7-201ENST00000445367 377 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 MRPL50P4-201ENST00000446432 475 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 ART2BP-201ENST00000453501 499 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC097493.1-201ENST00000463958 372 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC008571.1-201ENST00000467232 300 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 RPL31P50-201ENST00000471002 296 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC090525.1-201ENST00000479116 478 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 BET1P1-201ENST00000482276 359 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 SNORA70.16-201ENST00000516390 95 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AL133271.1-201ENST00000538229 291 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC090615.1-201ENST00000577519 154 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AL390208.1-201ENST00000605885 644 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC012557.2-201ENST00000605919 418 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC005046.1-201ENST00000608515 625 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC009090.3-201ENST00000616553 565 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC013470.4-201ENST00000619978 986 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC098679.4-201ENST00000624241 654 ntBASIC3.18□□□□□ -1.9
CLIP2Q9UDT6 AC138915.1-201ENST00000565427 1685 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 RPS4XP8-201ENST00000402039 771 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 FO393413.1-201ENST00000402892 195 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 RPS24P7-201ENST00000416921 246 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 MORF4L1P6-201ENST00000418771 268 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 AL513175.2-201ENST00000422071 443 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 USP9YP24-201ENST00000434374 697 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 MTCYBP45-201ENST00000435243 565 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 USP9YP17-201ENST00000444617 696 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 AL031183.1-201ENST00000457667 207 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 AC079395.1-201ENST00000510981 262 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 AC022483.1-201ENST00000514020 567 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 RNY4P37-201ENST00000516225 96 ntBASIC3.17□□□□□ -1.9
CLIP2Q9UDT6 SNORA9.3-201ENST00000516383 129 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms