Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL592447.1-201ENST00000447592 540 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AL590365.1-201ENST00000450788 243 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.81□□□□□ -1.96
LIME1Q9H400 SNRPFP4-201ENST00000456366 242 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.81□□□□□ -1.96
LIME1Q9H400 RNU7-59P-201ENST00000459101 61 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC092754.2-201ENST00000463506 460 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 RPL23AP67-201ENST00000465341 474 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LIME1Q9H400 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.81□□□□□ -1.96
LIME1Q9H400 HSPE1P6-201ENST00000479457 291 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AL049830.2-201ENST00000480072 201 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.81□□□□□ -1.96
LIME1Q9H400 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.81□□□□□ -1.96
LIME1Q9H400 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.81□□□□□ -1.96
LIME1Q9H400 AC105313.1-201ENST00000509121 353 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.81□□□□□ -1.96
LIME1Q9H400 AC008885.1-201ENST00000514930 301 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC022616.6-201ENST00000520479 119 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC068657.1-201ENST00000520807 306 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.81□□□□□ -1.96
LIME1Q9H400 MTND4LP18-201ENST00000526864 291 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AP000857.1-201ENST00000532151 543 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.81□□□□□ -1.96
LIME1Q9H400 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.81□□□□□ -1.96
LIME1Q9H400 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.81□□□□□ -1.96
LIME1Q9H400 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.81□□□□□ -1.96
LIME1Q9H400 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.81□□□□□ -1.96
LIME1Q9H400 COX6CP3-201ENST00000580869 223 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC010620.1-201ENST00000601088 1102 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC068790.3-201ENST00000602988 553 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AP001981.2-201ENST00000603241 418 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC112191.3-201ENST00000604371 277 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.81□□□□□ -1.96
LIME1Q9H400 AL158063.1-201ENST00000615349 536 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC027807.2-201ENST00000616099 408 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
LIME1Q9H400 XIST_intron.1-201ENST00000619444 68 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 Z69908.1-201ENST00000622603 247 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC018692.3-201ENST00000623929 123 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AL159972.1-201ENST00000625150 448 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC019226.1-201ENST00000625666 515 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC025048.6-202ENST00000627667 438 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
LIME1Q9H400 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
LIME1Q9H400 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.81□□□□□ -1.96
LIME1Q9H400 AC092326.2-201ENST00000624772 1561 ntBASIC2.81□□□□□ -1.96
LIME1Q9H400 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC2.81□□□□□ -1.96
LIME1Q9H400 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LIME1Q9H400 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.8□□□□□ -1.96
LIME1Q9H400 DDX10P1-201ENST00000448545 1933 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC005832.2-201ENST00000538921 1430 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 MIR148B-201ENST00000362252 99 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 SNORD116-9-201ENST00000384000 95 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 RNU6-432P-201ENST00000384196 109 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 SNORD116-3-201ENST00000384287 95 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 SNORD116-7-201ENST00000384404 95 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 SNORD116-5-201ENST00000384462 95 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AL109755.1-201ENST00000401791 649 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 CCNG1P1-201ENST00000406783 885 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AC245291.1-201ENST00000419501 328 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 RPL27AP8-201ENST00000424277 446 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AL356583.2-201ENST00000426536 280 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC005094.1-201ENST00000440420 368 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 TAF9P1-201ENST00000445421 515 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 TAF9P2-201ENST00000454958 515 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 RPL31P3-201ENST00000458430 332 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 RNA5SP269-201ENST00000459032 137 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 RPS27P29-201ENST00000463110 252 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AC004924.1-201ENST00000480160 781 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 VN1R104P-201ENST00000505115 1009 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 CBX3P3-201ENST00000508108 532 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC022878.1-201ENST00000530684 149 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AP000907.2-201ENST00000530827 353 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AP003122.4-201ENST00000530980 758 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.8□□□□□ -1.96
LIME1Q9H400 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.8□□□□□ -1.96
LIME1Q9H400 MIR548AB-201ENST00000584917 84 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC2.8□□□□□ -1.96
LIME1Q9H400 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.8□□□□□ -1.96
LIME1Q9H400 OR2AS2P-201ENST00000606902 342 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AC093732.2-201ENST00000607950 274 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms