Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CHMP4AQ9BY43 AL355596.1-201ENST00000565399 3996 ntBASIC4.12□□□□□ -1.75
CHMP4AQ9BY43 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 RNU6-884P-201ENST00000363889 107 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 RNU6-769P-201ENST00000384407 104 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 RNU6-83P-201ENST00000384568 112 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 MIR491-201ENST00000384877 84 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 RNU6-750P-201ENST00000390946 107 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 RNU6-1242P-201ENST00000391052 103 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 RNA5SP31-201ENST00000411144 127 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC009969.1-201ENST00000438726 172 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 RPS15AP7-201ENST00000439294 405 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 OR6K1P-201ENST00000456766 971 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC010401.1-201ENST00000463867 348 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 RN7SKP57-201ENST00000517248 293 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC087276.1-201ENST00000529659 480 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AP000907.2-201ENST00000530827 353 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC123904.3-201ENST00000547218 814 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC012493.2-201ENST00000595083 291 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 BNIP3P23-201ENST00000599655 511 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC097468.3-201ENST00000607956 456 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AP002791.1-201ENST00000623291 381 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC068787.1-201ENST00000623908 691 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AL356596.1-201ENST00000624230 379 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 ELF2P3-201ENST00000445099 1506 ntBASIC4.11□□□□□ -1.75
CHMP4AQ9BY43 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 Y_RNA.18-201ENST00000362461 102 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 RNU1-109P-201ENST00000383960 147 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 SNORD15B-201ENST00000384714 146 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 RPL7P8-201ENST00000411964 730 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC007899.1-201ENST00000412776 775 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 RPL31P12-201ENST00000422587 358 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC010631.1-201ENST00000474150 156 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 GTF2IP9-201ENST00000502460 301 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 MRPS36P2-201ENST00000512569 299 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 DEFB108A-201ENST00000530110 222 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 ABBA01006766.1-201ENST00000584728 294 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 BNIP3P40-201ENST00000596017 556 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC024560.3-201ENST00000608482 349 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC090970.3-201ENST00000612566 866 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 FRG1KP-201ENST00000623592 341 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC112204.3-201ENST00000623822 332 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 AC135776.4-201ENST00000624300 1904 ntBASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.1□□□□□ -1.75
CHMP4AQ9BY43 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 RNU6-1167P-201ENST00000363227 94 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 RNU6-1083P-201ENST00000384022 107 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 MIR483-201ENST00000385070 76 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 FTH1P1-201ENST00000437933 532 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 MRPS31P2-201ENST00000451581 518 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 HMGN1P18-201ENST00000457642 277 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 SNORD19.2-201ENST00000516978 73 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 RNA5SP380-201ENST00000517190 98 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 AC245884.10-201ENST00000597355 337 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 AL627309.6-201ENST00000606857 840 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 AC009974.1-201ENST00000608881 455 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 uc_338.25-201ENST00000613756 156 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 AC099506.2-201ENST00000623074 221 ntBASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.09□□□□□ -1.75
CHMP4AQ9BY43 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.09□□□□□ -1.76
CHMP4AQ9BY43 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CHMP4AQ9BY43 AC006378.2-201ENST00000623178 2476 ntBASIC4.09□□□□□ -1.76
CHMP4AQ9BY43 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.09□□□□□ -1.76
CHMP4AQ9BY43 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHMP4AQ9BY43 HMGB1P11-201ENST00000413899 637 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms