Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MIR4474-201ENST00000579189 78 ntBASIC0.84□□□□□ -2.27
COL7A1Q02388 U73023.1-201ENST00000603134 700 ntBASIC0.84□□□□□ -2.27
COL7A1Q02388 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC0.84□□□□□ -2.27
COL7A1Q02388 MIR924-201ENST00000638017 53 ntBASIC0.84□□□□□ -2.27
COL7A1Q02388 RNF6P1-201ENST00000444889 1784 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
COL7A1Q02388 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
COL7A1Q02388 SNORD56.5-201ENST00000364281 72 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 RNA5SP167-201ENST00000365461 116 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
COL7A1Q02388 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC0.84□□□□□ -2.28
COL7A1Q02388 ANP32BP3-201ENST00000559213 706 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC0.84□□□□□ -2.28
COL7A1Q02388 AL031775.1-201ENST00000607014 887 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 AC087588.2-201ENST00000617667 426 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 AC126177.8-201ENST00000618339 1015 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
COL7A1Q02388 XKRY2-202ENST00000623874 1581 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 XKRY-202ENST00000624960 1581 ntBASIC0.84□□□□□ -2.28
COL7A1Q02388 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
COL7A1Q02388 MIR1197-201ENST00000408818 88 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 MOB4-205ENST00000409916 829 ntTSL 3 BASIC0.83□□□□□ -2.28
COL7A1Q02388 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC0.83□□□□□ -2.28
COL7A1Q02388 AC239798.3-201ENST00000454459 408 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 RPL30P6-201ENST00000475925 342 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 RPS27AP10-201ENST00000496103 208 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.83□□□□□ -2.28
COL7A1Q02388 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC0.83□□□□□ -2.28
COL7A1Q02388 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC0.83□□□□□ -2.28
COL7A1Q02388 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC0.83□□□□□ -2.28
COL7A1Q02388 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
COL7A1Q02388 SNORA6-201ENST00000384033 151 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 MIR124-3-201ENST00000384866 87 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 BX682237.1-201ENST00000415016 335 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 Z75741.2-201ENST00000417272 1167 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 AC007098.1-201ENST00000420122 367 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC0.83□□□□□ -2.28
COL7A1Q02388 AC135999.1-201ENST00000478962 479 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.83□□□□□ -2.28
COL7A1Q02388 AC118942.1-201ENST00000529674 1035 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC0.83□□□□□ -2.28
COL7A1Q02388 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC0.83□□□□□ -2.28
COL7A1Q02388 AC112503.2-201ENST00000609005 552 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 AC006338.1-201ENST00000618453 749 ntBASIC0.83□□□□□ -2.28
COL7A1Q02388 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
COL7A1Q02388 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
COL7A1Q02388 MIR409-201ENST00000362237 79 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC009302.1-201ENST00000417147 390 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 HMGB1P49-201ENST00000418882 569 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC0.82□□□□□ -2.28
COL7A1Q02388 HSFY3P-201ENST00000444242 1191 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 BOLA3P3-201ENST00000505182 232 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 OR4R1P-201ENST00000529879 463 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 NOP56P3-201ENST00000549457 385 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC0.82□□□□□ -2.28
COL7A1Q02388 AC068338.1-201ENST00000565567 176 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC009127.3-201ENST00000570531 403 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 DUXAP11-201ENST00000603858 526 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC073413.2-201ENST00000604332 360 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 MIR6513-201ENST00000621188 64 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
COL7A1Q02388 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC0.82□□□□□ -2.28
COL7A1Q02388 AP000567.1-201ENST00000406413 156 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 TATDN1P1-201ENST00000414123 891 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AL512504.1-201ENST00000415494 778 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC106901.1-201ENST00000425086 698 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.82□□□□□ -2.28
COL7A1Q02388 AL121601.2-201ENST00000438019 707 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC098583.1-201ENST00000480875 255 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AP003072.2-201ENST00000527756 676 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
COL7A1Q02388 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
COL7A1Q02388 HSPE1P4-201ENST00000550617 308 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 MIR6840-201ENST00000611937 71 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC0.82□□□□□ -2.28
COL7A1Q02388 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC0.82□□□□□ -2.28
COL7A1Q02388 RNU1-52P-201ENST00000384190 164 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 RPL27AP8-201ENST00000424277 446 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC0.82□□□□□ -2.28
COL7A1Q02388 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC0.82□□□□□ -2.28
COL7A1Q02388 MTCO2P9-201ENST00000503214 694 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 RNU11-2P-201ENST00000516898 142 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC103833.1-201ENST00000517442 172 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC0.82□□□□□ -2.28
COL7A1Q02388 AC125611.2-201ENST00000551907 647 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AL512605.2-201ENST00000592972 256 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC0.82□□□□□ -2.28
COL7A1Q02388 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.82□□□□□ -2.28
COL7A1Q02388 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
COL7A1Q02388 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
COL7A1Q02388 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
COL7A1Q02388 RNU6-1320P-201ENST00000390838 107 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 RNU6-1269P-201ENST00000391139 107 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 SNRPEP10-201ENST00000420249 274 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC0.81□□□□□ -2.28
COL7A1Q02388 HMGN2P20-201ENST00000437531 273 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 AC004854.1-201ENST00000440356 349 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 RNU6-599P-201ENST00000459383 107 ntBASIC0.81□□□□□ -2.28
COL7A1Q02388 RNU6-1193P-201ENST00000459461 107 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms