Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 FCF1P1-201ENST00000432690 571 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 ARPC3P1-201ENST00000437218 533 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 AC073614.1-201ENST00000438690 650 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXC11O43248 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC11O43248 GAPDHP27-201ENST00000447427 1020 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXC11O43248 RNU6-420P-201ENST00000458780 107 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 MTND4LP3-201ENST00000468320 276 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC11O43248 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXC11O43248 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 RNU6-927P-201ENST00000516199 100 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 RNU6-1282P-201ENST00000516735 96 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 RNU2-46P-201ENST00000517038 113 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 RN7SKP258-201ENST00000517151 304 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 SNORA70.24-201ENST00000517233 118 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC11O43248 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.63□□□□□ -1.83
HOXC11O43248 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC11O43248 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 NRBF2P1-201ENST00000587407 859 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXC11O43248 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXC11O43248 AL592295.2-201ENST00000612578 206 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 AL442067.2-201ENST00000614033 363 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 AL138880.2-201ENST00000616214 239 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 PISRT1-201ENST00000626175 531 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 AL049641.1-201ENST00000441055 1948 ntBASIC3.63□□□□□ -1.83
HOXC11O43248 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
HOXC11O43248 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXC11O43248 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXC11O43248 AL354719.1-201ENST00000406535 843 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 RN7SKP111-201ENST00000410349 271 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 RNA5SP38-201ENST00000410750 119 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC11O43248 BTF3L4P3-201ENST00000418879 476 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 MTCO2P34-201ENST00000421994 607 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
HOXC11O43248 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC11O43248 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXC11O43248 PIGFP3-201ENST00000441918 722 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 USP9YP29-201ENST00000445112 563 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC11O43248 RPL21P8-201ENST00000465083 535 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 AC023598.1-201ENST00000472521 361 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 KC877373.1-201ENST00000479066 408 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC11O43248 RN7SL432P-201ENST00000484057 298 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXC11O43248 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC11O43248 MTND4LP22-201ENST00000508209 276 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 SNORA31.1-201ENST00000515993 133 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 SNORA31.5-201ENST00000516190 133 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 RNU7-51P-201ENST00000516560 62 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 SNORA18.6-201ENST00000516792 115 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXC11O43248 TRAV28-201ENST00000557548 323 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXC11O43248 AC006362.1-201ENST00000567392 174 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 DPPA3P3-201ENST00000603842 430 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 AL161734.1-201ENST00000609720 557 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 AC103710.2-201ENST00000609912 942 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 AC091304.9-201ENST00000612091 226 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC11O43248 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HOXC11O43248 MFSD8-233ENST00000641482 4860 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXC11O43248 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXC11O43248 AL356274.2-201ENST00000624379 3752 ntBASIC3.62□□□□□ -1.83
HOXC11O43248 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXC11O43248 AL390237.1-201ENST00000404226 1415 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXC11O43248 U8.3-201ENST00000363321 132 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 RNU6-511P-201ENST00000363496 107 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 MIR483-201ENST00000385070 76 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 EI24P2-201ENST00000397776 1076 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXC11O43248 U3.39-201ENST00000408569 239 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXC11O43248 ISCA1P6-201ENST00000427740 390 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 MTND4P32-201ENST00000437189 1237 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 Z82210.1-201ENST00000440037 231 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AL022238.1-201ENST00000442557 355 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC11O43248 MTATP6P30-201ENST00000443540 664 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC11O43248 AL136380.1-201ENST00000447970 162 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AC013267.1-201ENST00000458227 267 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms