Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNY4P24-201ENST00000362735 96 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 MIR490-201ENST00000384865 128 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 TXNP7-201ENST00000406296 293 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 RPL19P1-201ENST00000411635 428 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 UBE2FP1-201ENST00000416536 447 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 HMGN2P30-201ENST00000423237 256 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 MTCYBP39-201ENST00000437562 491 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 MTND5P2-201ENST00000442927 1142 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC115115.1-201ENST00000449927 248 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 RPS29P2-201ENST00000479278 136 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 RPL21P13-201ENST00000488305 481 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 RPS15AP36-201ENST00000492022 382 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 CDC42P4-201ENST00000510507 563 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC007458.1-201ENST00000542812 373 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 ACTR3BP3-201ENST00000565577 979 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC015917.1-201ENST00000579654 510 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 MIR4307-201ENST00000582802 84 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC012119.1-201ENST00000603184 222 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AL627309.6-201ENST00000606857 840 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC004908.2-201ENST00000609090 574 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AL591516.1-201ENST00000611326 274 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC009159.2-201ENST00000617603 606 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AL355493.4-201ENST00000618530 292 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 AC007671.2-201ENST00000637344 619 ntBASIC2.91□□□□□ -1.94
DDX28Q9NUL7 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC110754.1-201ENST00000399740 601 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AL109755.1-201ENST00000401791 649 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 RNA5SP229-201ENST00000410809 99 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 RNA5SP120-201ENST00000410900 112 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC096664.2-201ENST00000411843 406 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 OR2AS1P-201ENST00000427827 319 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AL512649.1-201ENST00000428997 581 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 RNU6-420P-201ENST00000458780 107 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 RN7SL499P-201ENST00000481141 276 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 OR2A20P-203ENST00000498397 1268 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 RNU6-1129P-201ENST00000515964 104 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 RNU6-1256P-201ENST00000516539 103 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 RNU6-1282P-201ENST00000516735 96 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 HMGB1P14-201ENST00000557424 591 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC091965.4-201ENST00000607691 587 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC087683.2-201ENST00000611384 326 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AL359198.2-201ENST00000611836 194 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 uc_338.1-201ENST00000612113 180 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC107871.2-201ENST00000612894 502 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC140725.3-201ENST00000616193 880 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC012150.2-201ENST00000621300 544 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AP002791.1-201ENST00000623291 381 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 AC112204.3-201ENST00000623822 332 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 FAM35BP-202ENST00000497389 3337 ntBASIC2.9□□□□□ -1.95
DDX28Q9NUL7 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.9□□□□□ -1.95
DDX28Q9NUL7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 RNU1-70P-201ENST00000362618 164 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 RNU1-33P-201ENST00000364249 162 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 RNU6-660P-201ENST00000364566 109 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 MIR19A-201ENST00000384878 82 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 TAS2R15P-201ENST00000390674 928 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 RN7SKP220-201ENST00000410611 288 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 SPA17P1-201ENST00000416656 452 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AL593851.1-201ENST00000426171 157 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 LARP1BP3-201ENST00000437229 869 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 CST9LP2-201ENST00000437612 320 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 RNU7-59P-201ENST00000459101 61 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC004263.1-201ENST00000479327 332 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC055855.1-201ENST00000489563 579 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC098799.2-201ENST00000509466 868 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.89□□□□□ -1.95
DDX28Q9NUL7 AP000857.1-201ENST00000532151 543 ntBASIC2.89□□□□□ -1.95
DDX28Q9NUL7 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms