Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU11-5P-201ENST00000391216 129 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.05□□□□□ -2.24
VPS13AQ96RL7 RPL7P34-201ENST00000433316 712 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.05□□□□□ -2.24
VPS13AQ96RL7 RPL21P39-201ENST00000463605 483 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 AP003072.2-201ENST00000527756 676 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 CBX3P7-201ENST00000532876 502 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 OR8X1P-201ENST00000534542 869 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 AL591212.2-201ENST00000433923 257 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 AL121601.2-201ENST00000438019 707 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 JTBP1-201ENST00000441314 247 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 RPS27P1-201ENST00000450552 247 ntBASIC1.05□□□□□ -2.24
VPS13AQ96RL7 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.05□□□□□ -2.24
VPS13AQ96RL7 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC1.05□□□□□ -2.24
VPS13AQ96RL7 RNA5SP465-201ENST00000391195 109 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AC099336.2-201ENST00000422457 254 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AP000926.1-201ENST00000479573 241 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 RPS15AP34-201ENST00000487776 387 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AC087808.1-201ENST00000520501 361 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 MIR8087-201ENST00000612745 78 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 RNU6-105P-201ENST00000363909 104 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 RNU6-670P-201ENST00000364312 104 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 DEFB108E-201ENST00000524692 240 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 GAS5-AS1-201ENST00000602767 694 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 SNRPEP3-201ENST00000338402 276 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 MIR1197-201ENST00000408818 88 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 PTGES3P5-201ENST00000455109 434 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AC024619.4-201ENST00000580924 316 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 MIR4295-201ENST00000585286 85 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AC005498.1-201ENST00000592125 465 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 AC097655.1-201ENST00000635075 318 ntBASIC1.04□□□□□ -2.24
VPS13AQ96RL7 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC1.03□□□□□ -2.24
VPS13AQ96RL7 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC1.03□□□□□ -2.24
VPS13AQ96RL7 IFNA20P-201ENST00000436840 528 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 RNA5SP309-201ENST00000516670 106 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 AC017076.1-201ENST00000607613 578 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 AC074140.1-201ENST00000621617 208 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 AC130650.2-201ENST00000618736 2403 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 RNU6-603P-201ENST00000411403 107 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 AC099548.1-201ENST00000421443 426 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 PRELID3BP4-201ENST00000515476 571 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC1.03□□□□□ -2.24
VPS13AQ96RL7 AC108706.1-201ENST00000611053 297 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 AC007742.2-201ENST00000618226 398 ntBASIC1.03□□□□□ -2.24
VPS13AQ96RL7 CUL4AP1-201ENST00000514750 1863 ntBASIC1.03□□□□□ -2.25
VPS13AQ96RL7 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
VPS13AQ96RL7 RPL5P19-201ENST00000404228 893 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
VPS13AQ96RL7 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.02□□□□□ -2.25
VPS13AQ96RL7 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
VPS13AQ96RL7 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC1.02□□□□□ -2.25
VPS13AQ96RL7 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.02□□□□□ -2.25
VPS13AQ96RL7 VTA1P2-201ENST00000520205 911 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 AC107918.3-201ENST00000533272 382 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 AC123912.3-201ENST00000600907 1367 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 AC092140.2-201ENST00000618027 521 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 XIST_intron.1-201ENST00000619444 68 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 AL360221.1-201ENST00000445989 335 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 MTND4LP22-201ENST00000508209 276 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 MIR4714-201ENST00000580728 77 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 RNU4-38P-201ENST00000364472 129 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 RNU6-203P-201ENST00000384038 104 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 HMGB1P13-201ENST00000406019 642 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.02□□□□□ -2.25
VPS13AQ96RL7 AC211469.2-201ENST00000605461 205 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 AL135786.2-201ENST00000608422 615 ntBASIC1.02□□□□□ -2.25
VPS13AQ96RL7 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC1.01□□□□□ -2.25
VPS13AQ96RL7 MTND5P25-201ENST00000430499 799 ntBASIC1.01□□□□□ -2.25
VPS13AQ96RL7 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.01□□□□□ -2.25
VPS13AQ96RL7 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.01□□□□□ -2.25
VPS13AQ96RL7 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.01□□□□□ -2.25
VPS13AQ96RL7 RPL7P27-201ENST00000403775 720 ntBASIC1.01□□□□□ -2.25
VPS13AQ96RL7 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.01□□□□□ -2.25
VPS13AQ96RL7 MIR7974-201ENST00000615835 79 ntBASIC1.01□□□□□ -2.25
VPS13AQ96RL7 AC090517.3-201ENST00000625170 141 ntBASIC1.01□□□□□ -2.25
VPS13AQ96RL7 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.01□□□□□ -2.25
VPS13AQ96RL7 Y_RNA.280-201ENST00000364765 112 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 MRPS36P1-201ENST00000421291 307 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 CST2P1-201ENST00000425770 87 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1□□□□□ -2.25
VPS13AQ96RL7 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1□□□□□ -2.25
VPS13AQ96RL7 AP004247.1-201ENST00000531556 1289 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 AC008962.1-201ENST00000605729 304 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 AC091925.1-201ENST00000623204 462 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC1□□□□□ -2.25
VPS13AQ96RL7 AC103710.2-202ENST00000641454 2853 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1□□□□□ -2.25
VPS13AQ96RL7 SNORA31.16-201ENST00000516773 139 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 AP001005.3-201ENST00000622049 129 ntBASIC1□□□□□ -2.25
VPS13AQ96RL7 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms