Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC080100.1-201ENST00000624239 5356 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RNU6-432P-201ENST00000384196 109 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 USP9YP26-201ENST00000421008 661 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC005019.1-201ENST00000436455 431 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 UBE2D3P1-201ENST00000436669 444 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 MTCYBP39-201ENST00000437562 491 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AL049734.2-201ENST00000441066 616 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 MTCO3P45-201ENST00000443036 613 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC009961.3-201ENST00000449832 765 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AL139824.2-201ENST00000458731 1095 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RNU7-59P-201ENST00000459101 61 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RPS29P12-201ENST00000460178 152 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RPS20P22-201ENST00000473700 357 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RPL31P60-201ENST00000478450 367 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RPL30P14-201ENST00000482744 348 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RPS3AP22-201ENST00000488297 769 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RN7SL20P-201ENST00000488827 297 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 MRPS33P3-201ENST00000513456 322 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 RNU6-1282P-201ENST00000516735 96 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 NRON-201ENST00000517270 370 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC007458.1-201ENST00000542812 373 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC004486.1-201ENST00000546846 233 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC124947.2-202ENST00000552735 133 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 HSPE1P7-201ENST00000604681 321 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC091965.4-201ENST00000607691 587 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 AC010338.1-201ENST00000621823 717 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 TPTE2P4-201ENST00000258589 1605 ntBASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
RPUSD4Q96CM3 MTND4P16-201ENST00000466108 1367 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 RNU6-660P-201ENST00000364566 109 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 SNORA62.3-201ENST00000365110 153 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 PTMAP2-201ENST00000397627 327 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 RPL7P25-201ENST00000404151 721 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AL590004.2-201ENST00000404787 371 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 Z99497.1-201ENST00000421282 135 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AL365203.2-201ENST00000423444 196 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC008850.1-201ENST00000427546 362 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AL831737.1-201ENST00000441288 271 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 PDSS1P2-201ENST00000449397 678 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 RNU6-420P-201ENST00000458780 107 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 RPS20P20-201ENST00000460498 340 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 MTCO2P6-201ENST00000463134 685 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC110794.1-201ENST00000505816 425 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC009901.1-201ENST00000506703 541 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 RNU6-201P-201ENST00000517100 61 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC025881.1-201ENST00000518851 512 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AP000857.1-201ENST00000532151 543 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AL133271.1-201ENST00000538229 291 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 ELOCP31-201ENST00000540463 467 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC008015.1-201ENST00000555505 465 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 NCAPGP2-201ENST00000557911 754 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 PCMTD1P2-201ENST00000565017 355 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 ACTR3BP3-201ENST00000565577 979 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC091489.2-201ENST00000566263 604 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 MIR2682-201ENST00000580305 110 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 RPL12P50-201ENST00000603116 116 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 AC119501.1-201ENST00000603646 475 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.37□□□□□ -2.03
RPUSD4Q96CM3 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms