Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC087465.1-201ENST00000560574 245 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 MIR3670-2-201ENST00000582974 65 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 MIR3670-1-201ENST00000584160 65 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 MIR3670-3-201ENST00000584855 65 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 MIR3670-4-201ENST00000612260 65 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 AC079395.3-201ENST00000615161 484 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 AC011330.2-201ENST00000621680 635 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 AC079597.1-201ENST00000624306 508 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 CRYM-AS1-204ENST00000637983 556 ntBASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC54Q8NEL0 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
CCDC54Q8NEL0 ZNF519P1-201ENST00000449011 1626 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 DEFB108F-201ENST00000344638 222 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 RNU6-931P-201ENST00000363850 107 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 SNORA25.6-201ENST00000364121 118 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 RNU4-28P-201ENST00000364739 141 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 RNU1-140P-201ENST00000365040 165 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AL356421.1-201ENST00000403255 413 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 RPL22P18-201ENST00000417197 377 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC092573.2-201ENST00000434546 243 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 RPL21P133-201ENST00000443666 476 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AL606662.1-201ENST00000445763 553 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 Z73417.1-201ENST00000447373 778 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC010099.1-201ENST00000455434 375 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 snoU13.8-201ENST00000458890 104 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 SNORD11.1-201ENST00000459482 85 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 LARP1BP2-201ENST00000486594 519 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC024589.1-201ENST00000512207 263 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 DEFB108D-201ENST00000527787 222 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC103710.4-201ENST00000609301 899 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AL356596.1-201ENST00000624230 379 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 OR4G2P-202ENST00000641004 1759 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 AC092447.10-201ENST00000620607 1652 ntBASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
CCDC54Q8NEL0 MTND5P33-201ENST00000571250 1450 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AL161781.1-201ENST00000354277 403 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 SNORA72.3-201ENST00000365074 132 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 MIR514A1-201ENST00000385133 98 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 ANAPC10P1-201ENST00000395991 556 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC112653.1-201ENST00000443851 386 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 ST13P20-201ENST00000447996 1065 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC126182.1-201ENST00000478134 357 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 KC877373.1-201ENST00000479066 408 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AL049874.1-201ENST00000489560 388 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC022447.3-201ENST00000506865 495 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 CDC42P4-201ENST00000510507 563 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC008716.1-201ENST00000511084 513 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 RNA5SP367-201ENST00000516557 118 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC009097.3-201ENST00000563557 1018 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC097468.3-201ENST00000607956 456 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC005046.1-201ENST00000608515 625 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AL162274.2-201ENST00000614406 332 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC027309.3-201ENST00000623419 351 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms