Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MTHFD2P4-201ENST00000515074 1025 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 SNORA31.1-201ENST00000515993 133 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RNU6-319P-201ENST00000516025 108 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 SNORA31.5-201ENST00000516190 133 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RNU6-405P-201ENST00000516637 110 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RN7SKP82-201ENST00000516786 223 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 HIGD1AP10-201ENST00000527837 282 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 GLYCAM1-201ENST00000546596 285 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC087883.1-201ENST00000551882 391 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RPS3AP4-201ENST00000555161 764 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A4P53420 CBX3P2-202ENST00000583365 535 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 BX664608.1-201ENST00000610519 487 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A4P53420 AL139418.1-201ENST00000613613 177 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC126177.8-201ENST00000618339 1015 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC072046.2-201ENST00000618366 268 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A4P53420 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A4P53420 MTND5P17-201ENST00000418405 1603 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC009487.2-201ENST00000420969 6821 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A4P53420 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A4P53420 CR848007.1-201ENST00000442354 1699 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A4P53420 Y_RNA.11-201ENST00000362375 109 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RNU6-1331P-201ENST00000363658 106 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
COL4A4P53420 AL590084.2-201ENST00000401481 382 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RAC1P8-201ENST00000427086 527 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.6□□□□□ -1.99
COL4A4P53420 AC093392.2-201ENST00000450682 337 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A4P53420 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A4P53420 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.6□□□□□ -1.99
COL4A4P53420 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A4P53420 AC002400.1-201ENST00000569310 726 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 MIR548S-201ENST00000581352 82 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 MIR4506-201ENST00000584693 77 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 OR4G1P-201ENST00000588632 938 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC087683.1-201ENST00000591187 441 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 AL451074.6-201ENST00000608512 729 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC103710.2-201ENST00000609912 942 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC002076.2-201ENST00000617362 122 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC099654.10-201ENST00000640395 161 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC2.59□□□□□ -1.99
COL4A4P53420 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL4A4P53420 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL4A4P53420 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.59□□□□□ -1.99
COL4A4P53420 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
COL4A4P53420 MTND4P23-201ENST00000447723 1363 ntBASIC2.59□□□□□ -1.99
COL4A4P53420 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL4A4P53420 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC2.59□□□□□ -1.99
COL4A4P53420 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC2.59□□□□□ -1.99
COL4A4P53420 RNA5SP456-201ENST00000364002 114 ntBASIC2.59□□□□□ -2
COL4A4P53420 Y_RNA.248-201ENST00000364501 109 ntBASIC2.59□□□□□ -2
COL4A4P53420 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC2.59□□□□□ -2
COL4A4P53420 snosnR66.1-201ENST00000391095 99 ntBASIC2.59□□□□□ -2
COL4A4P53420 AL162578.1-201ENST00000406202 378 ntBASIC2.59□□□□□ -2
COL4A4P53420 RNU2-16P-201ENST00000410712 136 ntBASIC2.59□□□□□ -2
COL4A4P53420 Z75741.2-201ENST00000417272 1167 ntBASIC2.59□□□□□ -2
COL4A4P53420 AC073136.2-201ENST00000417282 849 ntBASIC2.59□□□□□ -2
COL4A4P53420 MTCO2P19-201ENST00000427513 598 ntBASIC2.59□□□□□ -2
COL4A4P53420 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.59□□□□□ -2
COL4A4P53420 AL596276.1-201ENST00000434465 418 ntBASIC2.59□□□□□ -2
COL4A4P53420 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.59□□□□□ -2
COL4A4P53420 MTCYBP34-201ENST00000439552 670 ntBASIC2.59□□□□□ -2
COL4A4P53420 ELOCP10-201ENST00000440624 327 ntBASIC2.59□□□□□ -2
COL4A4P53420 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.59□□□□□ -2
COL4A4P53420 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.59□□□□□ -2
COL4A4P53420 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.59□□□□□ -2
COL4A4P53420 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.59□□□□□ -2
COL4A4P53420 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.59□□□□□ -2
COL4A4P53420 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC2.59□□□□□ -2
COL4A4P53420 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.59□□□□□ -2
COL4A4P53420 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC2.59□□□□□ -2
COL4A4P53420 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.59□□□□□ -2
COL4A4P53420 AC118273.2-201ENST00000532092 465 ntBASIC2.59□□□□□ -2
COL4A4P53420 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.59□□□□□ -2
COL4A4P53420 AC018630.1-201ENST00000541376 925 ntBASIC2.59□□□□□ -2
COL4A4P53420 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.59□□□□□ -2
COL4A4P53420 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.59□□□□□ -2
COL4A4P53420 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.59□□□□□ -2
COL4A4P53420 ELOCP34-201ENST00000604436 327 ntBASIC2.59□□□□□ -2
COL4A4P53420 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.59□□□□□ -2
COL4A4P53420 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.59□□□□□ -2
COL4A4P53420 AP001330.5-201ENST00000607176 411 ntBASIC2.59□□□□□ -2
COL4A4P53420 MIR6845-201ENST00000613182 61 ntBASIC2.59□□□□□ -2
COL4A4P53420 AC107075.1-201ENST00000613695 314 ntBASIC2.59□□□□□ -2
COL4A4P53420 AC010678.1-201ENST00000614118 713 ntBASIC2.59□□□□□ -2
COL4A4P53420 AC139769.3-201ENST00000618383 175 ntBASIC2.59□□□□□ -2
COL4A4P53420 U4.3-201ENST00000621047 82 ntBASIC2.59□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 189.5 ms