Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MTCYBP27-201ENST00000555160 670 ntBASIC2.87□□□□□ -1.95
MSH6P52701 AL356280.1-201ENST00000603614 379 ntBASIC2.87□□□□□ -1.95
MSH6P52701 AL390240.1-201ENST00000612950 384 ntBASIC2.87□□□□□ -1.95
MSH6P52701 AP000720.1-201ENST00000625091 483 ntBASIC2.87□□□□□ -1.95
MSH6P52701 AC244517.1-201ENST00000606030 2086 ntBASIC2.87□□□□□ -1.95
MSH6P52701 RNU1-138P-201ENST00000384093 164 ntBASIC2.87□□□□□ -1.95
MSH6P52701 RNU6-1300P-201ENST00000391046 108 ntBASIC2.87□□□□□ -1.95
MSH6P52701 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.87□□□□□ -1.95
MSH6P52701 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.87□□□□□ -1.95
MSH6P52701 RPL23AP76-201ENST00000441860 458 ntBASIC2.87□□□□□ -1.95
MSH6P52701 MTCO1P48-201ENST00000448024 1096 ntBASIC2.87□□□□□ -1.95
MSH6P52701 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
MSH6P52701 RPL23AP63-201ENST00000498752 471 ntBASIC2.87□□□□□ -1.95
MSH6P52701 AC093767.1-201ENST00000504523 156 ntBASIC2.87□□□□□ -1.95
MSH6P52701 ARL4AP2-201ENST00000507378 601 ntBASIC2.87□□□□□ -1.95
MSH6P52701 RNA5SP402-201ENST00000517148 110 ntBASIC2.87□□□□□ -1.95
MSH6P52701 NDUFS5P6-201ENST00000529136 295 ntBASIC2.87□□□□□ -1.95
MSH6P52701 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.87□□□□□ -1.95
MSH6P52701 AC006329.2-201ENST00000611491 394 ntBASIC2.87□□□□□ -1.95
MSH6P52701 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.87□□□□□ -1.95
MSH6P52701 AC109454.4-201ENST00000623411 649 ntBASIC2.87□□□□□ -1.95
MSH6P52701 AP002371.2-201ENST00000624450 503 ntBASIC2.87□□□□□ -1.95
MSH6P52701 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.87□□□□□ -1.95
MSH6P52701 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
MSH6P52701 AC009487.4-201ENST00000624969 3585 ntBASIC2.86□□□□□ -1.95
MSH6P52701 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
MSH6P52701 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.86□□□□□ -1.95
MSH6P52701 NUP58P1-201ENST00000502546 1738 ntBASIC2.86□□□□□ -1.95
MSH6P52701 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
MSH6P52701 RNU6-661P-201ENST00000362409 107 ntBASIC2.86□□□□□ -1.95
MSH6P52701 RNA5SP190-201ENST00000365222 118 ntBASIC2.86□□□□□ -1.95
MSH6P52701 SNORD82-201ENST00000365530 70 ntBASIC2.86□□□□□ -1.95
MSH6P52701 U3.29-201ENST00000391296 212 ntBASIC2.86□□□□□ -1.95
MSH6P52701 MTCO1P56-201ENST00000401674 224 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AL079342.2-201ENST00000403367 482 ntBASIC2.86□□□□□ -1.95
MSH6P52701 U3.37-201ENST00000408528 213 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AC096533.1-201ENST00000411645 353 ntBASIC2.86□□□□□ -1.95
MSH6P52701 HSPE1P1-201ENST00000421494 318 ntBASIC2.86□□□□□ -1.95
MSH6P52701 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH6P52701 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH6P52701 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH6P52701 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH6P52701 AL118520.1-201ENST00000450770 291 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AL445669.2-201ENST00000454425 421 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH6P52701 snoU13.18-201ENST00000459483 104 ntBASIC2.86□□□□□ -1.95
MSH6P52701 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
MSH6P52701 MLLT10P2-201ENST00000506434 249 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH6P52701 TRMT112P2-201ENST00000512910 132 ntBASIC2.86□□□□□ -1.95
MSH6P52701 MTCO2P32-201ENST00000514865 403 ntBASIC2.86□□□□□ -1.95
MSH6P52701 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.86□□□□□ -1.95
MSH6P52701 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.86□□□□□ -1.95
MSH6P52701 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.86□□□□□ -1.95
MSH6P52701 AC104072.1-201ENST00000568817 668 ntBASIC2.86□□□□□ -1.95
MSH6P52701 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.86□□□□□ -1.95
MSH6P52701 AL445435.1-201ENST00000604232 665 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AC091946.2-201ENST00000606105 291 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AC092954.1-201ENST00000609121 445 ntBASIC2.86□□□□□ -1.95
MSH6P52701 Y_RNA.783-201ENST00000613546 102 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH6P52701 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH6P52701 AC092650.2-201ENST00000619984 902 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AP003476.1-201ENST00000623984 516 ntBASIC2.86□□□□□ -1.95
MSH6P52701 ZNF271P-202ENST00000465539 1970 ntBASIC2.86□□□□□ -1.95
MSH6P52701 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH6P52701 VTRNA1-1-201ENST00000363120 99 ntBASIC2.85□□□□□ -1.95
MSH6P52701 RNU6-707P-201ENST00000364647 95 ntBASIC2.85□□□□□ -1.95
MSH6P52701 U8.10-201ENST00000384260 133 ntBASIC2.85□□□□□ -1.95
MSH6P52701 RNU1-101P-201ENST00000391171 127 ntBASIC2.85□□□□□ -1.95
MSH6P52701 RNA5SP181-201ENST00000410246 98 ntBASIC2.85□□□□□ -1.95
MSH6P52701 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH6P52701 MTCO3P1-205ENST00000422088 832 ntBASIC2.85□□□□□ -1.95
MSH6P52701 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.85□□□□□ -1.95
MSH6P52701 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH6P52701 AC109583.1-201ENST00000432156 268 ntBASIC2.85□□□□□ -1.95
MSH6P52701 AC092393.1-201ENST00000439625 742 ntBASIC2.85□□□□□ -1.95
MSH6P52701 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH6P52701 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH6P52701 AC004263.1-201ENST00000479327 332 ntBASIC2.85□□□□□ -1.95
MSH6P52701 AC013828.1-201ENST00000481845 158 ntBASIC2.85□□□□□ -1.95
MSH6P52701 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.85□□□□□ -1.95
MSH6P52701 MTCO3P35-201ENST00000485582 781 ntBASIC2.85□□□□□ -1.95
MSH6P52701 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH6P52701 SNORD59.2-201ENST00000516873 68 ntBASIC2.85□□□□□ -1.95
MSH6P52701 RNU6-1028P-201ENST00000517164 93 ntBASIC2.85□□□□□ -1.95
MSH6P52701 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH6P52701 DEFB130C-202ENST00000530001 230 ntBASIC2.85□□□□□ -1.95
MSH6P52701 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH6P52701 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH6P52701 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH6P52701 LRRC37A5P-203ENST00000580181 585 ntBASIC2.85□□□□□ -1.95
MSH6P52701 YWHAEP7-203ENST00000622054 312 ntBASIC2.85□□□□□ -1.95
MSH6P52701 AL138955.1-201ENST00000622881 1040 ntBASIC2.85□□□□□ -1.95
MSH6P52701 AC040168.1-201ENST00000623594 991 ntBASIC2.85□□□□□ -1.95
MSH6P52701 ZNF663P-202ENST00000641770 1131 ntBASIC2.85□□□□□ -1.95
MSH6P52701 GDI2P1-201ENST00000429312 1336 ntBASIC2.85□□□□□ -1.95
MSH6P52701 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
MSH6P52701 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
MSH6P52701 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms