Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RPS29P4-201ENST00000414733 161 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AL591212.2-201ENST00000433923 257 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 SNRPEP4-201ENST00000435815 279 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AF228730.2-201ENST00000438784 848 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 Z99127.3-201ENST00000448158 395 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 RNU7-63P-201ENST00000459054 62 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 KC877373.1-201ENST00000479066 408 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 RN7SL323P-201ENST00000494712 295 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AC019235.1-201ENST00000503847 207 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 ADI1P3-201ENST00000549509 470 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AL512360.1-201ENST00000555346 234 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 TRAV28-201ENST00000557548 323 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 HMGB1P33-201ENST00000563485 527 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AC106782.4-201ENST00000568264 210 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AC024619.4-201ENST00000580924 316 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AP001330.5-201ENST00000607176 411 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AC092794.1-201ENST00000612734 582 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 FP236240.3-201ENST00000623061 327 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 MTND1P37-201ENST00000636562 264 ntBASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC9Q9Y3X0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 RNA5SP295-201ENST00000362655 121 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 RNU6-1322P-201ENST00000364309 107 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 RNU6-61P-201ENST00000365528 109 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 MIR325-201ENST00000385260 98 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AC068050.1-201ENST00000394891 380 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AL359643.1-201ENST00000404109 423 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 MRPL50P2-201ENST00000416821 482 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 EIF1P1-201ENST00000421436 341 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AL512844.2-201ENST00000433990 593 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 Z82210.1-201ENST00000440037 231 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 CYCSP32-201ENST00000440548 321 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AC010342.1-201ENST00000514047 877 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 RNA5SP290-201ENST00000517133 127 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 MTND1P5-201ENST00000517906 940 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AL512310.1-201ENST00000548639 172 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 AL158032.1-201ENST00000605401 106 ntBASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CCDC9Q9Y3X0 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 Y_RNA.9-201ENST00000362354 101 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 MIR183-201ENST00000384958 110 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 SOD2P1-201ENST00000396543 562 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 RPS4XP3-201ENST00000398541 413 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AL109913.1-201ENST00000421173 514 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 RPL7P54-201ENST00000438336 674 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 ABCF2P2-201ENST00000450549 296 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AL356010.1-201ENST00000456364 102 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 RPS29P15-201ENST00000458329 171 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 ARL4AP2-201ENST00000507378 601 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 RNA5SP503-201ENST00000517047 117 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 CASP1P1-201ENST00000526345 212 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 RANP3-201ENST00000530970 276 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 OR5BN1P-201ENST00000532955 829 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC025946.2-201ENST00000603398 234 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC098826.3-201ENST00000603823 466 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC008962.1-201ENST00000605729 304 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC012409.4-201ENST00000612923 249 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AL359547.2-201ENST00000615810 418 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 AC027309.3-201ENST00000623419 351 ntBASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC9Q9Y3X0 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms