Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
CCDC113Q9H0I3 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC113Q9H0I3 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC113Q9H0I3 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
CCDC113Q9H0I3 SDAD1P2-201ENST00000441308 2028 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 RNA5SP175-201ENST00000364275 119 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 RNU4-20P-201ENST00000365601 151 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 RNU6-550P-201ENST00000391057 101 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 UBE2V1P2-201ENST00000397758 440 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 Y_RNA.615-201ENST00000410769 117 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 KCTD9P3-201ENST00000434597 1169 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 UQCRHP4-201ENST00000471686 272 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 MTND3P22-201ENST00000510932 243 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 NARSP2-201ENST00000518524 679 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 IGLV3-26-201ENST00000520756 302 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AP003730.1-201ENST00000524605 285 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AL352979.3-201ENST00000553515 247 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AC067852.3-201ENST00000589177 561 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AC002545.1-201ENST00000592511 181 ntBASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC113Q9H0I3 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 RNU1-14P-201ENST00000362759 152 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 Y_RNA.356-201ENST00000365475 113 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 RN7SKP177-201ENST00000410567 355 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 MIR1911-201ENST00000410783 80 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 EIF4EP1-201ENST00000422311 642 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 HMGN2P26-201ENST00000463169 339 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AC078918.1-201ENST00000498515 228 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 SNORA31.8-201ENST00000516327 108 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 MIR3921-201ENST00000577308 85 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AL161729.3-201ENST00000603533 673 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 ARF4P1-201ENST00000605447 541 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 FAM27D1-201ENST00000612308 341 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AL357559.1-201ENST00000622228 274 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 AC008013.2-202ENST00000637965 364 ntBASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
CCDC113Q9H0I3 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.65
CCDC113Q9H0I3 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 OR4G2P-202ENST00000641004 1759 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AP004289.2-201ENST00000444413 1457 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 Y_RNA.100-201ENST00000363141 102 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 SNORA51.2-201ENST00000364595 132 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 Y_RNA.263-201ENST00000364659 114 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 RNA5SP22-201ENST00000365393 109 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 MIR514A2-201ENST00000385131 88 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 MIR514A3-201ENST00000385132 88 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 RNU6-817P-201ENST00000391083 104 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 RNA5SP239-201ENST00000410218 129 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AL513331.1-201ENST00000411908 397 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AL451054.2-201ENST00000420896 202 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AL365400.1-201ENST00000431854 640 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 MTND4LP16-201ENST00000440828 295 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 NUTF2P3-201ENST00000448540 384 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AL590639.1-201ENST00000456484 337 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 RPS26P28-201ENST00000470806 348 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AC105137.1-201ENST00000484355 562 ntBASIC4.71□□□□□ -1.66
CCDC113Q9H0I3 AL592156.1-201ENST00000508758 304 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms