Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC008013.2-202ENST00000637965 364 ntBASIC4.89□□□□□ -1.63
SF3A1Q15459 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.89□□□□□ -1.63
SF3A1Q15459 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SF3A1Q15459 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
SF3A1Q15459 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
SF3A1Q15459 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.88□□□□□ -1.63
SF3A1Q15459 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SF3A1Q15459 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SF3A1Q15459 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SF3A1Q15459 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SF3A1Q15459 RNU6-1167P-201ENST00000363227 94 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 RNU6-512P-201ENST00000364438 103 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
SF3A1Q15459 RNU6-116P-201ENST00000384042 109 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 MIR325-201ENST00000385260 98 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 RNU2-29P-201ENST00000410423 189 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AC080125.1-201ENST00000414888 684 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 RAC1P3-201ENST00000416129 580 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.88□□□□□ -1.63
SF3A1Q15459 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.88□□□□□ -1.63
SF3A1Q15459 RPL18P10-201ENST00000425606 538 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.88□□□□□ -1.63
SF3A1Q15459 RPL23AP89-201ENST00000439324 255 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 RBMX2P4-201ENST00000441256 376 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.88□□□□□ -1.63
SF3A1Q15459 ELOCP23-201ENST00000452014 332 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.88□□□□□ -1.63
SF3A1Q15459 AC087588.1-201ENST00000462203 316 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 RPL21P8-201ENST00000465083 535 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 RPL7P5-201ENST00000471472 736 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 KC877373.1-201ENST00000479066 408 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SF3A1Q15459 RNU1-61P-201ENST00000516107 151 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 RN7SKP219-201ENST00000516825 296 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 RNA5SP290-201ENST00000517133 127 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.88□□□□□ -1.63
SF3A1Q15459 AC069240.1-201ENST00000548774 375 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.88□□□□□ -1.63
SF3A1Q15459 AC012417.1-201ENST00000582307 1039 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AC008521.1-201ENST00000587471 187 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AC098826.3-201ENST00000603823 466 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.88□□□□□ -1.63
SF3A1Q15459 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AC002553.4-201ENST00000616896 331 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SF3A1Q15459 AL445363.3-201ENST00000623080 671 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 MIR3662-201ENST00000637030 95 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SF3A1Q15459 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SF3A1Q15459 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SF3A1Q15459 MTND4P14-201ENST00000435799 1354 ntBASIC4.88□□□□□ -1.63
SF3A1Q15459 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.88□□□□□ -1.63
SF3A1Q15459 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SF3A1Q15459 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.87□□□□□ -1.63
SF3A1Q15459 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.87□□□□□ -1.63
SF3A1Q15459 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SF3A1Q15459 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SF3A1Q15459 AC004972.1-201ENST00000623934 2209 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 SNORA70.2-201ENST00000364506 135 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 RNU6-1068P-201ENST00000410958 103 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.87□□□□□ -1.63
SF3A1Q15459 TMEM167AP1-201ENST00000423409 219 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AL157831.1-201ENST00000426134 473 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AL451062.2-201ENST00000427515 271 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 PHBP16-201ENST00000446318 950 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 DPPA3P1-201ENST00000448050 469 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 SNRPFP3-201ENST00000457792 225 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
SF3A1Q15459 AL160314.1-201ENST00000490836 438 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 MYL12AP1-201ENST00000518490 515 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AC009643.1-201ENST00000532030 391 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 TRAV8-5-201ENST00000537369 341 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.87□□□□□ -1.63
SF3A1Q15459 HIF1AP1-201ENST00000553642 175 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.87□□□□□ -1.63
SF3A1Q15459 BNIP3P30-201ENST00000601184 574 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.87□□□□□ -1.63
SF3A1Q15459 AC015813.4-201ENST00000610469 179 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AC064801.1-201ENST00000612025 407 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 uc_338.32-201ENST00000615087 172 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AP001486.3-201ENST00000615334 372 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AC010338.1-201ENST00000621823 717 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 AC140479.6-201ENST00000633535 357 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SF3A1Q15459 Z82217.1-201ENST00000625157 8149 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.87□□□□□ -1.63
SF3A1Q15459 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.87□□□□□ -1.63
SF3A1Q15459 AF127577.6-201ENST00000623352 2191 ntBASIC4.87□□□□□ -1.63
SF3A1Q15459 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.86□□□□□ -1.63
SF3A1Q15459 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.86□□□□□ -1.63
SF3A1Q15459 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.86□□□□□ -1.63
SF3A1Q15459 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SF3A1Q15459 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SF3A1Q15459 AC007785.2-201ENST00000598627 1916 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms