Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SMARCA1P28370 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
SMARCA1P28370 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 RNU6-1155P-201ENST00000363554 107 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 RNU6-637P-201ENST00000384050 107 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 HMGN2P8-201ENST00000391458 268 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 RPS4XP8-201ENST00000402039 771 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 BEND7P1-201ENST00000422058 457 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 AC137499.1-201ENST00000427602 88 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.29□□□□□ -1.72
SMARCA1P28370 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AL049714.1-201ENST00000466686 347 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 RPL31P58-201ENST00000469001 379 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.29□□□□□ -1.72
SMARCA1P28370 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 AC079382.1-201ENST00000493346 557 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 AP002812.1-201ENST00000495378 474 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 RPL7P47-201ENST00000497299 556 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 RNU2-58P-201ENST00000516403 183 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 RANP9-201ENST00000519957 271 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 DEFB108D-201ENST00000527787 222 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 AC109635.3-201ENST00000529536 185 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 AC104383.1-201ENST00000530297 370 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 OR5D17P-201ENST00000531492 978 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.29□□□□□ -1.72
SMARCA1P28370 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.29□□□□□ -1.72
SMARCA1P28370 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.29□□□□□ -1.72
SMARCA1P28370 SNORD84-203ENST00000584275 78 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 TUG1_1.1-201ENST00000610654 145 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.29□□□□□ -1.72
SMARCA1P28370 AP000553.6-201ENST00000641242 118 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SMARCA1P28370 CR848007.1-201ENST00000442354 1699 ntBASIC4.29□□□□□ -1.72
SMARCA1P28370 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.28□□□□□ -1.72
SMARCA1P28370 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SMARCA1P28370 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.28□□□□□ -1.72
SMARCA1P28370 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
SMARCA1P28370 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
SMARCA1P28370 MTCO1P9-201ENST00000505577 1534 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 SNORD56.2-201ENST00000363242 71 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 RNU5E-8P-201ENST00000363502 116 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 RNU6-108P-201ENST00000365558 107 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 RNU6-278P-201ENST00000390945 109 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 RNU6-754P-201ENST00000391166 107 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 SNORA48.7-201ENST00000391302 135 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SMARCA1P28370 MTHFD2P2-201ENST00000407725 247 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 RNU2-62P-201ENST00000410868 191 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 USP9YP27-201ENST00000418455 438 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 RPL21P109-201ENST00000422213 475 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 AC018644.1-201ENST00000429934 551 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 GPR143P-201ENST00000434155 205 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 HMGB1P31-201ENST00000437242 427 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.28□□□□□ -1.72
SMARCA1P28370 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC4.28□□□□□ -1.72
SMARCA1P28370 RNU6-420P-201ENST00000458780 107 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 SNORA84-201ENST00000459229 133 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 AC092451.1-201ENST00000480211 153 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 RPL7P23-201ENST00000493874 747 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.28□□□□□ -1.72
SMARCA1P28370 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.28□□□□□ -1.72
SMARCA1P28370 RNU1-95P-201ENST00000516357 160 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 RNU1-128P-201ENST00000516704 160 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 AC023632.4-201ENST00000517783 191 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.28□□□□□ -1.72
SMARCA1P28370 AL512310.1-201ENST00000548639 172 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 MIR548S-201ENST00000581352 82 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 AC098848.2-201ENST00000588023 330 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 GLUD1P4-201ENST00000590914 418 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 AC006254.3-201ENST00000603353 884 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 AC012442.3-202ENST00000636742 206 ntBASIC4.28□□□□□ -1.72
SMARCA1P28370 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.28□□□□□ -1.72
SMARCA1P28370 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.28□□□□□ -1.72
SMARCA1P28370 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.28□□□□□ -1.72
SMARCA1P28370 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SMARCA1P28370 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SMARCA1P28370 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AL133383.2-201ENST00000622958 2336 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 AL645937.1-201ENST00000641739 1652 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 RNU6-1120P-201ENST00000362988 108 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 Y_RNA.89-201ENST00000363031 102 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 RNU6-511P-201ENST00000363496 107 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 RNU6-1097P-201ENST00000363586 107 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms