Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.85□□□□□ -1.63
COL8A1P27658 AL110118.1-201ENST00000553543 400 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.85□□□□□ -1.63
COL8A1P27658 AC127455.1-201ENST00000565496 145 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 RN7SL802P-201ENST00000577858 299 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 RPL23AP78-201ENST00000599928 470 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AC069307.1-201ENST00000602820 447 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.85□□□□□ -1.63
COL8A1P27658 AC090607.5-201ENST00000615692 224 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 MIR7703-201ENST00000620784 77 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.85□□□□□ -1.63
COL8A1P27658 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 AC007529.1-201ENST00000418574 2178 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AC008568.2-201ENST00000623862 2313 ntBASIC4.85□□□□□ -1.63
COL8A1P27658 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 DCN-218ENST00000551354 2924 ntTSL 3 BASIC4.85□□□□□ -1.63
COL8A1P27658 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL8A1P27658 AC005005.4-201ENST00000623789 16698 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL8A1P27658 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL8A1P27658 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL8A1P27658 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL8A1P27658 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
COL8A1P27658 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC4.84□□□□□ -1.63
COL8A1P27658 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL8A1P27658 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL8A1P27658 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
COL8A1P27658 MIR410-201ENST00000362222 80 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 RNA5SP479-201ENST00000364858 117 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 RNU6-14P-201ENST00000384630 106 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 RNU6-21P-201ENST00000384710 107 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 RNU6-817P-201ENST00000391083 104 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 MIR1302-4-201ENST00000408701 150 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AL590139.1-201ENST00000416267 400 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 RPL30P13-201ENST00000418873 348 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 SEPT7P4-201ENST00000437076 306 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 CYCSP43-201ENST00000438233 310 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AL596266.1-201ENST00000448132 400 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.84□□□□□ -1.63
COL8A1P27658 AC022795.1-201ENST00000473808 480 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.84□□□□□ -1.63
COL8A1P27658 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC4.84□□□□□ -1.63
COL8A1P27658 RNU6-612P-201ENST00000516909 102 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC134698.5-201ENST00000519444 336 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.84□□□□□ -1.63
COL8A1P27658 AK6P2-201ENST00000549020 471 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC090617.3-201ENST00000573670 475 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.84□□□□□ -1.63
COL8A1P27658 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.84□□□□□ -1.63
COL8A1P27658 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC4.84□□□□□ -1.63
COL8A1P27658 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.84□□□□□ -1.63
COL8A1P27658 MIR15A-201ENST00000607334 83 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC023043.4-201ENST00000612081 449 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC004852.3-201ENST00000614131 326 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC109583.2-201ENST00000617367 129 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.84□□□□□ -1.63
COL8A1P27658 AC099506.2-201ENST00000623074 221 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.84□□□□□ -1.63
COL8A1P27658 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL8A1P27658 AL022311.1-201ENST00000623726 19416 ntBASIC4.84□□□□□ -1.63
COL8A1P27658 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
COL8A1P27658 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC4.84□□□□□ -1.64
COL8A1P27658 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL8A1P27658 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL8A1P27658 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 AC125336.1-201ENST00000508893 2827 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 RNU6-653P-201ENST00000363074 106 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 RNA5SP505-201ENST00000364748 108 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 RNU6-1293P-201ENST00000384077 107 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 RNU6-429P-201ENST00000384582 108 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 MIR578-201ENST00000384828 96 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL8A1P27658 RNU6-1064P-201ENST00000410626 104 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.83□□□□□ -1.64
COL8A1P27658 AL357134.1-201ENST00000445848 426 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 snoU13.29-201ENST00000459370 104 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 AC009127.1-201ENST00000467090 155 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 VN1R105P-201ENST00000486595 910 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 AOX3P-204ENST00000491025 2107 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 AC005912.1-201ENST00000495392 255 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 RNU7-175P-201ENST00000515915 61 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms