Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CENPBD1P1-201ENST00000464061 469 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC104619.4-201ENST00000510773 249 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 RNU6-201P-201ENST00000517100 61 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 RN7SKP258-201ENST00000517151 304 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC026403.1-201ENST00000518938 295 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC123904.2-201ENST00000548059 300 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC008015.1-201ENST00000555505 465 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 MIR3146-201ENST00000580367 79 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC090616.2-202ENST00000584248 222 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 MIR4293-201ENST00000584305 78 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC008739.2-201ENST00000597006 317 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 RPL23AP78-201ENST00000599928 470 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 DUXAP4-201ENST00000603046 613 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AL353778.1-201ENST00000603149 408 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC004832.5-201ENST00000608677 401 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC009159.1-201ENST00000618386 642 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AC127502.3-201ENST00000636170 1206 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 AL445523.1-201ENST00000451184 1362 ntBASIC2.81□□□□□ -1.96
FOXA2Q9Y261 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA2Q9Y261 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AC007823.1-201ENST00000569932 1566 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 RNU5F-6P-201ENST00000362979 116 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 RNY3P13-201ENST00000365542 102 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 SNORD21-201ENST00000383953 95 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 RPL7P25-201ENST00000404151 721 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 RNU2-62P-201ENST00000410868 191 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 USP9YP13-201ENST00000417797 480 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AC005005.2-201ENST00000420779 380 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 HMGN2P30-201ENST00000423237 256 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AL353777.1-201ENST00000425552 326 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 SAR1AP4-201ENST00000429225 591 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 ZNF114P1-201ENST00000453500 292 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 RN7SL601P-201ENST00000471221 293 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AC112204.1-201ENST00000502591 103 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AC021146.5-201ENST00000503544 545 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 RN7SKP282-201ENST00000516824 299 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AL391261.3-201ENST00000557194 520 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AC091489.2-201ENST00000566263 604 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 MTND4LP5-201ENST00000605152 292 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 MIR7844-201ENST00000616161 122 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AP003399.1-201ENST00000637534 361 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 AC007496.3-201ENST00000624987 3443 ntBASIC2.8□□□□□ -1.96
FOXA2Q9Y261 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
FOXA2Q9Y261 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC017071.1-201ENST00000564407 2204 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 FRG1CP-201ENST00000358464 769 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 RNU6-1167P-201ENST00000363227 94 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 RNU6-533P-201ENST00000384144 107 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 MTCYBP36-201ENST00000404146 440 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 NDUFS5P1-201ENST00000405668 289 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC093578.1-201ENST00000415219 368 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC006366.1-201ENST00000422002 759 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AL353678.1-201ENST00000422735 741 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AL365496.1-201ENST00000426885 215 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 CYCSP4-201ENST00000429682 331 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC010153.1-201ENST00000432862 727 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 HSPD1P21-201ENST00000436541 245 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AL512286.1-201ENST00000439244 400 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 RPL26P9-201ENST00000457466 433 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 RNU7-125P-201ENST00000458760 62 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC010468.1-201ENST00000461022 817 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC087588.1-201ENST00000462203 316 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms