Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC100770.1-201ENST00000532310 322 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 NCAPGP2-201ENST00000557911 754 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC091135.1-201ENST00000585943 307 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC104985.2-201ENST00000620598 500 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC010338.1-201ENST00000621823 717 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC110801.1-201ENST00000623590 212 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AC004972.1-201ENST00000623934 2209 ntBASIC4.18□□□□□ -1.74
TDP1Q9NUW8 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.18□□□□□ -1.74
TDP1Q9NUW8 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 GABPAP-201ENST00000419271 1356 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 RNU6-179P-201ENST00000363350 107 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 RNU6-335P-201ENST00000364563 113 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 RNA5SP235-201ENST00000365411 114 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 SNORA24.1-201ENST00000384401 135 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 MIR670-201ENST00000390142 98 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 RAC1P6-201ENST00000423911 575 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AC018644.1-201ENST00000429934 551 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 CYCSP43-201ENST00000438233 310 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 NDUFS5P3-201ENST00000450668 321 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 RPL7L1P8-201ENST00000469911 741 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AP000852.1-201ENST00000472460 573 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 HMGN1P12-201ENST00000499125 195 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AC092436.1-201ENST00000506450 503 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 RNU6-875P-201ENST00000516488 106 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 RN7SKP219-201ENST00000516825 296 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 SNORA31.20-201ENST00000517111 133 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 SNORA31.22-201ENST00000517204 135 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AP005435.4-201ENST00000529514 284 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AL138976.2-201ENST00000563989 694 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 UBE2V2P2-201ENST00000587677 504 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AC010525.2-201ENST00000590920 195 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 BNIP3P22-201ENST00000593399 556 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AC039056.2-201ENST00000622261 511 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 CR392039.5-201ENST00000623201 510 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
TDP1Q9NUW8 AL136964.1-201ENST00000622038 2990 ntBASIC4.17□□□□□ -1.74
TDP1Q9NUW8 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 RNU6-76P-201ENST00000384060 104 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 MIR200C-201ENST00000384980 68 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 RNU6-373P-201ENST00000411247 98 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL133547.1-201ENST00000448546 220 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 PMCHL2-203ENST00000457791 237 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 S100A11P1-201ENST00000477525 312 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 RN7SL432P-201ENST00000484057 298 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 RPL38P4-201ENST00000502376 214 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 RNU6-390P-201ENST00000516259 103 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 IGLV3-26-201ENST00000520756 302 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 SUMO2P20-201ENST00000520803 283 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 OR5B10P-201ENST00000532869 642 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.16□□□□□ -1.74
TDP1Q9NUW8 SNORD84-203ENST00000584275 78 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 SNRPGP15-201ENST00000600149 222 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL670379.6-201ENST00000603753 252 ntBASIC4.16□□□□□ -1.74
TDP1Q9NUW8 AL670379.11-201ENST00000604059 253 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 158.5 ms