Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.16□□□□□ -1.9
VMP1Q96GC9 AC098799.2-201ENST00000509466 868 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 LTV1P1-201ENST00000510683 1237 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 MRPS36P2-201ENST00000512569 299 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 MTND5P13-201ENST00000513046 1079 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 APOOP4-201ENST00000513530 597 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 RPPH1-2P-201ENST00000516688 293 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 SCARNA1-201ENST00000517138 166 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 RN7SKP40-201ENST00000517211 242 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.16□□□□□ -1.9
VMP1Q96GC9 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.16□□□□□ -1.9
VMP1Q96GC9 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.16□□□□□ -1.9
VMP1Q96GC9 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.16□□□□□ -1.9
VMP1Q96GC9 AC136618.2-201ENST00000575091 400 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 BNIP3P22-201ENST00000593399 556 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 MTND4LP5-201ENST00000605152 292 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 AC007349.4-201ENST00000608114 532 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 AC006927.4-201ENST00000639187 543 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
VMP1Q96GC9 AL356274.2-201ENST00000624379 3752 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VMP1Q96GC9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.16□□□□□ -1.9
VMP1Q96GC9 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.15□□□□□ -1.9
VMP1Q96GC9 RNA5SP267-201ENST00000364893 126 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 Z99755.1-201ENST00000414048 380 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 USP9YP26-201ENST00000421008 661 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC006946.1-201ENST00000429106 328 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC097262.1-201ENST00000452559 548 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 RPL26P9-201ENST00000457466 433 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 RNU7-59P-201ENST00000459101 61 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC010631.1-201ENST00000474150 156 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 RPL23AP70-201ENST00000483361 460 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AL358832.1-201ENST00000497800 389 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 OR2A20P-203ENST00000498397 1268 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 RNA5SP290-201ENST00000517133 127 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC105185.1-201ENST00000518705 535 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC022634.1-201ENST00000520765 532 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VMP1Q96GC9 GLYCAM1-201ENST00000546596 285 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC093012.1-202ENST00000549403 582 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 MTND4P33-201ENST00000556706 766 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 MIR4276-201ENST00000584832 70 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC007038.2-201ENST00000608095 740 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC009464.1-201ENST00000615731 469 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC097655.1-201ENST00000635075 318 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.91
VMP1Q96GC9 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
VMP1Q96GC9 AC093831.2-201ENST00000624393 3427 ntBASIC3.15□□□□□ -1.91
VMP1Q96GC9 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VMP1Q96GC9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VMP1Q96GC9 MTND5P1-201ENST00000445440 1375 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VMP1Q96GC9 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC017071.1-201ENST00000564407 2204 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 RNU6-157P-201ENST00000383957 107 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 RNVU1-14-201ENST00000384770 164 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 U3.19-201ENST00000390893 196 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 RNA5SP344-201ENST00000411081 104 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 BX323014.1-201ENST00000412876 237 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VMP1Q96GC9 MTCO2P21-201ENST00000419780 677 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AL158156.1-201ENST00000422509 473 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC008264.1-201ENST00000447612 367 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC013267.1-201ENST00000458227 267 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 RPL36AP51-201ENST00000487216 318 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 RNU6-927P-201ENST00000516199 100 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC107934.2-201ENST00000518653 310 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC007115.1-201ENST00000546853 234 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC123904.3-201ENST00000547218 814 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC011471.1-201ENST00000585766 187 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC067852.3-201ENST00000589177 561 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AL161734.1-201ENST00000609720 557 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC127502.3-201ENST00000636170 1206 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 MTND5P19-201ENST00000424872 1794 ntBASIC3.14□□□□□ -1.91
VMP1Q96GC9 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.14□□□□□ -1.91
VMP1Q96GC9 AC092125.1-201ENST00000562568 1995 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms