Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.455-201ENST00000384230 98 ntBASIC4.6□□□□□ -1.67
RNF4P78317 RNU6-293P-201ENST00000411259 106 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.6□□□□□ -1.67
RNF4P78317 COX6B1P1-201ENST00000415962 213 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.6□□□□□ -1.67
RNF4P78317 AL691482.1-201ENST00000453255 87 ntBASIC4.6□□□□□ -1.67
RNF4P78317 RNU7-138P-201ENST00000459479 64 ntBASIC4.6□□□□□ -1.67
RNF4P78317 RPL37P6-201ENST00000460682 294 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC231760.1-201ENST00000498002 260 ntBASIC4.6□□□□□ -1.67
RNF4P78317 RNU6-635P-201ENST00000516651 102 ntBASIC4.6□□□□□ -1.67
RNF4P78317 RNU6-914P-201ENST00000516749 109 ntBASIC4.6□□□□□ -1.67
RNF4P78317 SNORD116.3-201ENST00000517176 78 ntBASIC4.6□□□□□ -1.67
RNF4P78317 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
RNF4P78317 AC090151.1-201ENST00000520784 730 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.6□□□□□ -1.67
RNF4P78317 AL161670.1-201ENST00000554348 137 ntBASIC4.6□□□□□ -1.67
RNF4P78317 HMGB3P26-201ENST00000560051 582 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.6□□□□□ -1.67
RNF4P78317 AC113195.1-201ENST00000579952 141 ntBASIC4.6□□□□□ -1.67
RNF4P78317 MIR4436B2-201ENST00000581415 91 ntBASIC4.6□□□□□ -1.67
RNF4P78317 MIR4436B1-201ENST00000583272 91 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.6□□□□□ -1.67
RNF4P78317 AC104695.3-201ENST00000604052 296 ntBASIC4.6□□□□□ -1.67
RNF4P78317 NUTF2P8-201ENST00000604593 363 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC010680.4-201ENST00000605334 543 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC099669.2-201ENST00000616549 437 ntBASIC4.6□□□□□ -1.67
RNF4P78317 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.6□□□□□ -1.67
RNF4P78317 AC019206.1-201ENST00000621938 425 ntBASIC4.6□□□□□ -1.67
RNF4P78317 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 MIR4275-201ENST00000636486 87 ntBASIC4.6□□□□□ -1.67
RNF4P78317 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 MAPK10-304ENST00000641341 3984 ntBASIC4.6□□□□□ -1.67
RNF4P78317 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 AC066616.2-201ENST00000559334 1481 ntBASIC4.6□□□□□ -1.67
RNF4P78317 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 ZNF285B-201ENST00000561698 1767 ntBASIC4.6□□□□□ -1.67
RNF4P78317 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 IRF5P1-201ENST00000504852 2164 ntBASIC4.6□□□□□ -1.67
RNF4P78317 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
RNF4P78317 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 SNORA73.1-201ENST00000363107 205 ntBASIC4.59□□□□□ -1.67
RNF4P78317 Y_RNA.151-201ENST00000363566 112 ntBASIC4.59□□□□□ -1.67
RNF4P78317 Y_RNA.176-201ENST00000363815 109 ntBASIC4.59□□□□□ -1.67
RNF4P78317 RNU6-450P-201ENST00000364654 107 ntBASIC4.59□□□□□ -1.67
RNF4P78317 RNU6-702P-201ENST00000364982 107 ntBASIC4.59□□□□□ -1.67
RNF4P78317 SET-203ENST00000372688 801 ntTSL 2 BASIC4.59□□□□□ -1.67
RNF4P78317 RNU6-842P-201ENST00000384269 107 ntBASIC4.59□□□□□ -1.67
RNF4P78317 MIR578-201ENST00000384828 96 ntBASIC4.59□□□□□ -1.67
RNF4P78317 SNORD73A-201ENST00000386062 65 ntBASIC4.59□□□□□ -1.67
RNF4P78317 Y_RNA.645-201ENST00000391229 102 ntBASIC4.59□□□□□ -1.67
RNF4P78317 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.59□□□□□ -1.67
RNF4P78317 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 AC119751.6-201ENST00000416712 186 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AC114482.1-201ENST00000418010 247 ntBASIC4.59□□□□□ -1.67
RNF4P78317 DPH3P2-201ENST00000422618 250 ntBASIC4.59□□□□□ -1.67
RNF4P78317 HMGB1P9-201ENST00000429856 646 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AC099654.2-201ENST00000433031 1980 ntBASIC4.59□□□□□ -1.67
RNF4P78317 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 RPL26P6-201ENST00000440913 438 ntBASIC4.59□□□□□ -1.67
RNF4P78317 NOTCH2P1-201ENST00000443481 624 ntBASIC4.59□□□□□ -1.67
RNF4P78317 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 AL360271.2-201ENST00000447710 161 ntBASIC4.59□□□□□ -1.67
RNF4P78317 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.59□□□□□ -1.67
RNF4P78317 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 MTND3P25-201ENST00000509243 135 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 AC021006.3-201ENST00000530771 192 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AP002404.1-201ENST00000532005 451 ntBASIC4.59□□□□□ -1.67
RNF4P78317 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
RNF4P78317 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.59□□□□□ -1.67
RNF4P78317 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
RNF4P78317 OR8R1P-201ENST00000543943 764 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AC091516.1-201ENST00000549191 703 ntBASIC4.59□□□□□ -1.67
RNF4P78317 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.59□□□□□ -1.67
RNF4P78317 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 AC084783.1-201ENST00000565846 910 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AC005592.1-201ENST00000566527 1640 ntBASIC4.59□□□□□ -1.67
RNF4P78317 MIR3934-201ENST00000579806 107 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.59□□□□□ -1.67
RNF4P78317 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.59□□□□□ -1.67
RNF4P78317 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.59□□□□□ -1.67
RNF4P78317 AC092447.9-201ENST00000603395 144 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AL158163.1-201ENST00000603915 1649 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AC024940.4-201ENST00000605507 246 ntBASIC4.59□□□□□ -1.67
RNF4P78317 RNU6-85P-201ENST00000605989 107 ntBASIC4.59□□□□□ -1.67
RNF4P78317 AL133243.3-201ENST00000617415 3004 ntBASIC4.59□□□□□ -1.67
RNF4P78317 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.59□□□□□ -1.67
RNF4P78317 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms