Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNORA31.20-201ENST00000517111 133 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC007991.1-201ENST00000522680 631 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AP003072.2-201ENST00000527756 676 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC109635.4-202ENST00000531666 412 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AP003034.1-201ENST00000534621 422 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.32□□□□□ -1.72
SMARCA1P28370 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.32□□□□□ -1.72
SMARCA1P28370 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.32□□□□□ -1.72
SMARCA1P28370 AC025678.1-201ENST00000567861 338 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 MTCO3P24-201ENST00000572729 782 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC006504.3-201ENST00000586818 523 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC007363.1-201ENST00000604736 620 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC008277.2-201ENST00000605196 797 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AL158211.4-201ENST00000606988 584 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC104458.1-201ENST00000608243 463 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC009161.2-201ENST00000624626 138 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.32□□□□□ -1.72
SMARCA1P28370 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.32□□□□□ -1.72
SMARCA1P28370 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SMARCA1P28370 AP001350.1-201ENST00000601906 1524 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC138915.3-201ENST00000562908 1389 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SMARCA1P28370 MIR135A2-201ENST00000384854 100 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC068050.1-201ENST00000394891 380 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 RAB9AP3-201ENST00000412737 573 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 MTATP6P18-201ENST00000417994 673 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 MTCO1P20-201ENST00000425366 358 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.31□□□□□ -1.72
SMARCA1P28370 AL445584.1-201ENST00000431451 330 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 RPL23AP30-201ENST00000432419 501 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 RAB9AP1-201ENST00000449393 573 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 RPS24P6-201ENST00000452670 400 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC108059.3-201ENST00000456388 214 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC4.31□□□□□ -1.72
SMARCA1P28370 RPS3AP50-201ENST00000487064 803 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 RPL21P129-201ENST00000491732 478 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC069439.1-201ENST00000494739 167 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC135721.1-201ENST00000497954 479 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.31□□□□□ -1.72
SMARCA1P28370 PRDX4P1-201ENST00000507189 574 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.31□□□□□ -1.72
SMARCA1P28370 RNA5SP208-201ENST00000516156 78 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC4.31□□□□□ -1.72
SMARCA1P28370 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.31□□□□□ -1.72
SMARCA1P28370 AL157687.1-201ENST00000554853 619 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.31□□□□□ -1.72
SMARCA1P28370 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.31□□□□□ -1.72
SMARCA1P28370 AC025449.1-201ENST00000603896 529 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC245389.1-201ENST00000605141 529 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AP001330.5-201ENST00000607176 411 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.31□□□□□ -1.72
SMARCA1P28370 AC004908.2-201ENST00000609090 574 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 AL121772.2-201ENST00000614331 297 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SMARCA1P28370 AL136313.1-201ENST00000624804 202 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 MIR1321-201ENST00000637766 79 ntBASIC4.31□□□□□ -1.72
SMARCA1P28370 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.3□□□□□ -1.72
SMARCA1P28370 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
SMARCA1P28370 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.3□□□□□ -1.72
SMARCA1P28370 USP8P1-201ENST00000494673 3183 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 RNY1P12-201ENST00000364251 105 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 SNORA51.2-201ENST00000364595 132 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 Y_RNA.303-201ENST00000364998 94 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 Y_RNA.381-201ENST00000365666 102 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 RNU1-39P-201ENST00000383897 165 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 RNU6-39P-201ENST00000384344 107 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 RNU6-516P-201ENST00000411381 104 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AL138799.3-201ENST00000438968 350 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC093156.1-201ENST00000440382 670 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AL133547.1-201ENST00000448546 220 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.3□□□□□ -1.72
SMARCA1P28370 RNU7-59P-201ENST00000459101 61 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 RNU7-170P-201ENST00000459303 61 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 RN7SL542P-201ENST00000467147 294 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC010285.1-201ENST00000470580 392 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.3□□□□□ -1.72
SMARCA1P28370 BTF3L4P4-201ENST00000506381 449 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.3□□□□□ -1.72
SMARCA1P28370 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AP005205.1-201ENST00000563503 508 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 MIR1254-2-201ENST00000579553 63 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC244505.7-201ENST00000599675 272 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.3□□□□□ -1.72
SMARCA1P28370 Z84480.1-201ENST00000605131 311 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC103710.3-201ENST00000608157 948 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AC002553.4-201ENST00000616896 331 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC022306.2-201ENST00000617563 647 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC039056.2-201ENST00000622261 511 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.3□□□□□ -1.72
SMARCA1P28370 AC112200.1-201ENST00000625015 234 ntBASIC4.3□□□□□ -1.72
SMARCA1P28370 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.3□□□□□ -1.72
SMARCA1P28370 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms