Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RPL31P50-201ENST00000471002 296 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.14□□□□□ -2.07
CCDC42Q96M95 IGJP1-201ENST00000522682 475 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 OR5AK1P-201ENST00000524837 922 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC42Q96M95 OR11H5P-201ENST00000554039 926 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 MIR5089-201ENST00000580047 84 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 AL160281.1-201ENST00000605307 311 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC42Q96M95 Y_RNA.783-201ENST00000613546 102 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 AL356585.4-201ENST00000623078 1229 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 AL356266.1-201ENST00000623311 483 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.14□□□□□ -2.07
CCDC42Q96M95 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 SNORD115-48-201ENST00000364764 76 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 AP002784.2-201ENST00000397300 549 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 AL589655.1-201ENST00000405398 482 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 GPM6BP3-201ENST00000442797 145 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 HGF-207ENST00000453018 721 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 AC092155.2-201ENST00000454675 477 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 AC147055.4-201ENST00000504399 745 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 AP001317.1-201ENST00000531194 960 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 AC009063.1-201ENST00000563342 702 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 AC103710.4-201ENST00000609301 899 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 AC073308.1-201ENST00000623696 305 ntBASIC2.13□□□□□ -2.07
CCDC42Q96M95 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC42Q96M95 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC42Q96M95 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.13□□□□□ -2.07
CCDC42Q96M95 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC42Q96M95 RN7SKP226-201ENST00000364912 300 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AL355615.1-201ENST00000406187 641 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AL030996.1-201ENST00000411430 235 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AL356379.1-201ENST00000414105 126 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC024082.2-201ENST00000434771 238 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.12□□□□□ -2.07
CCDC42Q96M95 HSPE1P6-201ENST00000479457 291 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC42Q96M95 RN7SL274P-201ENST00000492268 272 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.12□□□□□ -2.07
CCDC42Q96M95 FAM92A1P1-201ENST00000528023 890 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC025918.2-201ENST00000558683 763 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC095057.3-201ENST00000567102 1157 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC015688.2-201ENST00000584523 262 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC105224.1-201ENST00000587055 421 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC42Q96M95 AC010872.1-201ENST00000624225 675 ntBASIC2.12□□□□□ -2.07
CCDC42Q96M95 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.12□□□□□ -2.07
CCDC42Q96M95 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CCDC42Q96M95 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC42Q96M95 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AL445529.1-201ENST00000398713 389 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 AL023284.1-201ENST00000403956 276 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 OR51A3P-201ENST00000413596 924 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 OR4K6P-201ENST00000416478 897 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 RPL31P54-201ENST00000429803 370 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 GTF2IP20-201ENST00000431663 360 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AL592447.1-201ENST00000447592 540 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 AC109464.2-201ENST00000510242 943 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 RNU5A-7P-201ENST00000515979 116 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 RNU6-416P-201ENST00000516265 103 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 AC103783.1-201ENST00000520506 373 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AGGF1P5-201ENST00000567900 919 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 MTCO1P40-201ENST00000574371 625 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AL020997.3-201ENST00000602843 359 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC42Q96M95 AP001521.1-201ENST00000609150 300 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 MIR7515-201ENST00000637837 67 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 OR5H6-203ENST00000642105 978 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 MTND5P11-201ENST00000511037 1812 ntBASIC2.11□□□□□ -2.07
CCDC42Q96M95 AC009487.4-201ENST00000624969 3585 ntBASIC2.1□□□□□ -2.07
CCDC42Q96M95 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.1□□□□□ -2.07
CCDC42Q96M95 SNORA46.1-201ENST00000391069 153 ntBASIC2.1□□□□□ -2.07
CCDC42Q96M95 NPM1P10-201ENST00000398310 865 ntBASIC2.1□□□□□ -2.07
CCDC42Q96M95 RNA5SP489-201ENST00000410986 109 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms