Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS53Q5VIR6 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 RNA5SP235-201ENST00000365411 114 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 RNU6-629P-201ENST00000384061 103 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 SNORD51-201ENST00000384320 80 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AL356421.1-201ENST00000403255 413 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 CCNG1P1-201ENST00000406783 885 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 RAP1BP3-201ENST00000407180 549 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 RNU6-195P-201ENST00000411352 109 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 USP9YP6-201ENST00000413550 854 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 MTND3P17-201ENST00000416968 344 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 PSMA6P3-201ENST00000428242 164 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AC091286.1-201ENST00000431233 461 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 C1DP4-201ENST00000455429 424 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 RPS3AP50-201ENST00000487064 803 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 ARL4AP2-201ENST00000507378 601 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 RNU6-528P-201ENST00000516926 100 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 OR5AQ1P-201ENST00000527596 927 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 MIR4644-201ENST00000579929 84 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 BX664608.1-201ENST00000610519 487 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AC091925.2-201ENST00000625059 256 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AL034408.1-202ENST00000636088 415 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AC099654.14-201ENST00000638599 341 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS53Q5VIR6 AC116096.1-201ENST00000566804 2314 ntBASIC4.32□□□□□ -1.72
VPS53Q5VIR6 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RNU6-600P-201ENST00000362524 99 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 Y_RNA.390-201ENST00000383932 102 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RPL23AP32-201ENST00000395315 459 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 MRPL42P2-201ENST00000403169 426 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RN7SKP285-201ENST00000410137 318 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RNU2-37P-201ENST00000410695 177 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC078974.1-201ENST00000411597 223 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RPL30P2-201ENST00000414021 291 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC112653.1-201ENST00000443851 386 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 Z95327.1-201ENST00000446082 482 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RPS3AP46-201ENST00000448352 682 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RPS24P6-201ENST00000452670 400 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RPL7P15-201ENST00000461190 712 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AP001992.1-205ENST00000462248 379 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC084357.1-201ENST00000473404 255 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RPS3AP14-201ENST00000483907 780 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC009646.1-201ENST00000510455 318 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC074344.1-201ENST00000512823 224 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RNU6-579P-201ENST00000516879 102 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 SNORA31.20-201ENST00000517111 133 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RNU6-1073P-201ENST00000517182 106 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 IGKV2D-23-201ENST00000518179 286 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 RANP9-201ENST00000519957 271 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 FAM92A1P1-201ENST00000528023 890 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AP003181.2-201ENST00000528941 181 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AL845331.3-202ENST00000562856 261 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 HMGB1P33-201ENST00000563485 527 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC090615.1-201ENST00000577519 154 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 SNORD84-203ENST00000584275 78 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC008277.2-201ENST00000605196 797 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 AC034229.5-201ENST00000624258 185 ntBASIC4.31□□□□□ -1.72
VPS53Q5VIR6 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS53Q5VIR6 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 Y_RNA.402-201ENST00000383972 102 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 Y_RNA.453-201ENST00000384223 109 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms