Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC009977.1-201ENST00000586015 570 ntBASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 HMGN1P30-201ENST00000589286 268 ntBASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 AL137843.1-201ENST00000605078 385 ntBASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 AC121334.2-201ENST00000605387 271 ntBASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 AC007038.2-201ENST00000608095 740 ntBASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 AC009159.1-201ENST00000618386 642 ntBASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 AC243312.2-201ENST00000623340 601 ntBASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 RPS4XP5-202ENST00000449995 1334 ntBASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
PDLIM3Q53GG5 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 SRP72P2-201ENST00000344851 1979 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 RNU6-213P-201ENST00000384051 104 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 RNU6-297P-201ENST00000384636 107 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 Y_RNA.559-201ENST00000384686 107 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 MIR30B-201ENST00000384850 88 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 SNORA48.8-201ENST00000391324 134 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 HMGN1P24-201ENST00000412282 298 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 SYF2P2-201ENST00000417620 583 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 RPS15AP12-201ENST00000419498 388 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AL691449.1-201ENST00000426570 421 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 HSPD1P21-201ENST00000436541 245 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AL121871.1-201ENST00000443413 436 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 MTCO2P7-201ENST00000446518 666 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 RPL21P8-201ENST00000465083 535 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC084198.1-201ENST00000477747 402 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 CBX3P3-201ENST00000508108 532 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 MTCO3P7-201ENST00000510008 774 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 CYCSP30-201ENST00000546447 172 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 RPL21P5-201ENST00000554662 472 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC087752.4-201ENST00000605911 462 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC004067.1-201ENST00000608733 700 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AP000254.1-201ENST00000609934 520 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC099778.2-201ENST00000610904 211 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 MIR6868-201ENST00000611215 58 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC138932.5-201ENST00000617759 563 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC139792.2-201ENST00000624218 587 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AL136313.1-201ENST00000624804 202 ntBASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PDLIM3Q53GG5 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 RNY4P24-201ENST00000362735 96 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 RNU6-173P-201ENST00000364215 104 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 RNA5SP267-201ENST00000364893 126 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 OR5H15-201ENST00000383696 930 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 MIR19A-201ENST00000384878 82 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC019097.1-201ENST00000424783 735 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 OR5BE1P-201ENST00000425977 939 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 MTCO1P39-201ENST00000426148 480 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 ISCA1P6-201ENST00000427740 390 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AC115115.1-201ENST00000449927 248 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 NANOGP10-201ENST00000453325 895 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 SSXP1-201ENST00000453640 473 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 AL033528.1-201ENST00000453780 140 ntBASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.12□□□□□ -1.91
PDLIM3Q53GG5 RPS15AP36-201ENST00000492022 382 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms