Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.6□□□□□ -1.83
BDNFP23560 AC136601.2-201ENST00000604356 474 ntBASIC3.6□□□□□ -1.83
BDNFP23560 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.6□□□□□ -1.83
BDNFP23560 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.6□□□□□ -1.83
BDNFP23560 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.6□□□□□ -1.83
BDNFP23560 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.6□□□□□ -1.83
BDNFP23560 MTND5P29-201ENST00000458676 1807 ntBASIC3.6□□□□□ -1.83
BDNFP23560 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
BDNFP23560 CCT4P2-201ENST00000233836 1548 ntBASIC3.6□□□□□ -1.83
BDNFP23560 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.59□□□□□ -1.83
BDNFP23560 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
BDNFP23560 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.59□□□□□ -1.83
BDNFP23560 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
BDNFP23560 RNU6-769P-201ENST00000384407 104 ntBASIC3.59□□□□□ -1.83
BDNFP23560 SNORA11.1-201ENST00000408133 129 ntBASIC3.59□□□□□ -1.83
BDNFP23560 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
BDNFP23560 Z99755.1-201ENST00000414048 380 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AL008987.1-201ENST00000415528 237 ntBASIC3.59□□□□□ -1.83
BDNFP23560 RPS24P7-201ENST00000416921 246 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.59□□□□□ -1.83
BDNFP23560 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AC244035.1-201ENST00000430042 390 ntBASIC3.59□□□□□ -1.83
BDNFP23560 YWHAZP7-201ENST00000436906 631 ntBASIC3.59□□□□□ -1.83
BDNFP23560 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.59□□□□□ -1.83
BDNFP23560 MTCYBP3-201ENST00000445588 1137 ntBASIC3.59□□□□□ -1.83
BDNFP23560 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.59□□□□□ -1.83
BDNFP23560 RNU6-56P-201ENST00000516986 93 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AC007115.1-201ENST00000546853 234 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AC123904.3-201ENST00000547218 814 ntBASIC3.59□□□□□ -1.83
BDNFP23560 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.59□□□□□ -1.83
BDNFP23560 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.59□□□□□ -1.83
BDNFP23560 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
BDNFP23560 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.59□□□□□ -1.83
BDNFP23560 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.59□□□□□ -1.83
BDNFP23560 AC078899.3-201ENST00000599065 212 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AC021171.1-201ENST00000603137 706 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AC025588.2-201ENST00000604851 466 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AC027449.1-201ENST00000608890 407 ntBASIC3.59□□□□□ -1.83
BDNFP23560 AC090970.3-201ENST00000612566 866 ntBASIC3.59□□□□□ -1.83
BDNFP23560 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
BDNFP23560 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
BDNFP23560 AL359693.1-201ENST00000614959 2407 ntBASIC3.59□□□□□ -1.84
BDNFP23560 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
BDNFP23560 AL356274.2-201ENST00000624379 3752 ntBASIC3.58□□□□□ -1.84
BDNFP23560 FTLP6-201ENST00000355274 422 ntBASIC3.58□□□□□ -1.84
BDNFP23560 SNORD56.5-201ENST00000364281 72 ntBASIC3.58□□□□□ -1.84
BDNFP23560 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
BDNFP23560 RNA5SP120-201ENST00000410900 112 ntBASIC3.58□□□□□ -1.84
BDNFP23560 RPL22P18-201ENST00000417197 377 ntBASIC3.58□□□□□ -1.84
BDNFP23560 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.58□□□□□ -1.84
BDNFP23560 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.58□□□□□ -1.84
BDNFP23560 AC005326.1-201ENST00000429197 123 ntBASIC3.58□□□□□ -1.84
BDNFP23560 HMGB1P27-201ENST00000431429 603 ntBASIC3.58□□□□□ -1.84
BDNFP23560 SETP8-201ENST00000435341 628 ntBASIC3.58□□□□□ -1.84
BDNFP23560 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.58□□□□□ -1.84
BDNFP23560 BX510359.1-201ENST00000456973 237 ntBASIC3.58□□□□□ -1.84
BDNFP23560 AC010468.1-201ENST00000461022 817 ntBASIC3.58□□□□□ -1.84
BDNFP23560 RPS27P29-201ENST00000463110 252 ntBASIC3.58□□□□□ -1.84
BDNFP23560 AC010631.1-201ENST00000474150 156 ntBASIC3.58□□□□□ -1.84
BDNFP23560 SNORA70.19-201ENST00000516717 90 ntBASIC3.58□□□□□ -1.84
BDNFP23560 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.58□□□□□ -1.84
BDNFP23560 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.58□□□□□ -1.84
BDNFP23560 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
BDNFP23560 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
BDNFP23560 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
BDNFP23560 MRPS36P5-201ENST00000551909 298 ntBASIC3.58□□□□□ -1.84
BDNFP23560 NACAP3-201ENST00000552100 481 ntBASIC3.58□□□□□ -1.84
BDNFP23560 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.58□□□□□ -1.84
BDNFP23560 MIR4738-201ENST00000579134 87 ntBASIC3.58□□□□□ -1.84
BDNFP23560 MIR4276-201ENST00000584832 70 ntBASIC3.58□□□□□ -1.84
BDNFP23560 AC091965.4-201ENST00000607691 587 ntBASIC3.58□□□□□ -1.84
BDNFP23560 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
BDNFP23560 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.58□□□□□ -1.84
BDNFP23560 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.58□□□□□ -1.84
BDNFP23560 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.58□□□□□ -1.84
BDNFP23560 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.58□□□□□ -1.84
BDNFP23560 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
BDNFP23560 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
BDNFP23560 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
BDNFP23560 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BDNFP23560 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BDNFP23560 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BDNFP23560 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BDNFP23560 RNU6-1284P-201ENST00000363701 100 ntBASIC3.57□□□□□ -1.84
BDNFP23560 RNU5A-8P-201ENST00000364102 114 ntBASIC3.57□□□□□ -1.84
BDNFP23560 RNU4-28P-201ENST00000364739 141 ntBASIC3.57□□□□□ -1.84
BDNFP23560 AL136116.1-201ENST00000403591 381 ntBASIC3.57□□□□□ -1.84
BDNFP23560 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.57□□□□□ -1.84
BDNFP23560 AC245291.1-201ENST00000419501 328 ntBASIC3.57□□□□□ -1.84
BDNFP23560 HMGB1P9-201ENST00000429856 646 ntBASIC3.57□□□□□ -1.84
BDNFP23560 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.57□□□□□ -1.84
BDNFP23560 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.57□□□□□ -1.84
BDNFP23560 FTH1P1-201ENST00000437933 532 ntBASIC3.57□□□□□ -1.84
BDNFP23560 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.57□□□□□ -1.84
BDNFP23560 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.57□□□□□ -1.84
BDNFP23560 RPL7P36-201ENST00000444633 681 ntBASIC3.57□□□□□ -1.84
BDNFP23560 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.57□□□□□ -1.84
BDNFP23560 AL606517.1-201ENST00000446914 387 ntBASIC3.57□□□□□ -1.84
BDNFP23560 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.57□□□□□ -1.84
BDNFP23560 MRPS17P3-201ENST00000465453 385 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms