Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 AC151836.1-202ENSMUST00000226259 753 ntBASIC18.46■□□□□ 0.55
Upf1Q9EPU0 AC154239.3-201ENSMUST00000226933 674 ntBASIC18.46■□□□□ 0.55
Upf1Q9EPU0 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Upf1Q9EPU0 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Upf1Q9EPU0 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Upf1Q9EPU0 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC18.46■□□□□ 0.55
Upf1Q9EPU0 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Gm11478-201ENSMUST00000117851 599 ntBASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Gm15358-201ENSMUST00000119249 520 ntBASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC18.45■□□□□ 0.54
Upf1Q9EPU0 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Fst-202ENSMUST00000223640 2612 ntBASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Upf1Q9EPU0 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Gm13829-201ENSMUST00000119600 138 ntBASIC18.44■□□□□ 0.54
Upf1Q9EPU0 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf1Q9EPU0 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Gm8344-201ENSMUST00000119813 856 ntBASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Gm45384-201ENSMUST00000210451 277 ntBASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Gm5357-201ENSMUST00000212720 1924 ntBASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf1Q9EPU0 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf1Q9EPU0 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Gm6415-201ENSMUST00000118488 348 ntBASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Mir6404-201ENSMUST00000183699 94 ntBASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 AC124732.1-201ENSMUST00000221551 910 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms