Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC15.5■□□□□ 0.07
Rnf220Q6PDX6 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rnf220Q6PDX6 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rnf220Q6PDX6 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rnf220Q6PDX6 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Rnf220Q6PDX6 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Gm12933-201ENSMUST00000120203 872 ntBASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Rnf220Q6PDX6 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Rnf220Q6PDX6 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Gm11927-201ENSMUST00000118472 759 ntBASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Rnf220Q6PDX6 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Gm43272-201ENSMUST00000200599 1584 ntBASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Gm42901-201ENSMUST00000197735 3171 ntBASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 AC122769.4-201ENSMUST00000228166 901 ntBASIC15.46■□□□□ 0.07
Rnf220Q6PDX6 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 14.6 ms