Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Rtl3Q6P1Y1 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Rtl3Q6P1Y1 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Gm44430-201ENSMUST00000203376 995 ntBASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Rtl3Q6P1Y1 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Rtl3Q6P1Y1 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rtl3Q6P1Y1 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Gm24589-201ENSMUST00000116692 94 ntBASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Gm36967-201ENSMUST00000193814 266 ntBASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Gm44771-201ENSMUST00000206975 626 ntBASIC16.77■□□□□ 0.28
Rtl3Q6P1Y1 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms