Protein–RNA interactions for Protein: Q5U4C3

Scaf1, Splicing factor, arginine/serine-rich 19, mousemouse

Known RBP Predictions only

Length 1,256 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf1Q5U4C3 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scaf1Q5U4C3 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scaf1Q5U4C3 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC21.2■□□□□ 0.98
Scaf1Q5U4C3 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Gm45606-201ENSMUST00000209836 2795 ntBASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scaf1Q5U4C3 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Gm6257-201ENSMUST00000163864 910 ntBASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scaf1Q5U4C3 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Gm37153-201ENSMUST00000193637 231 ntBASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Gm44487-201ENSMUST00000205145 325 ntBASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 AC117588.1-201ENSMUST00000228510 999 ntBASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scaf1Q5U4C3 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 AC093926.2-201ENSMUST00000214468 1228 ntBASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Ndufaf2-202ENSMUST00000223734 556 ntBASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Fam105a-203ENSMUST00000226170 3043 ntBASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scaf1Q5U4C3 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Scaf1Q5U4C3 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Scaf1Q5U4C3 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scaf1Q5U4C3 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scaf1Q5U4C3 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scaf1Q5U4C3 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scaf1Q5U4C3 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scaf1Q5U4C3 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Gm10175-201ENSMUST00000086013 645 ntBASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Scaf1Q5U4C3 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms