Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Gm33142-201ENSMUST00000193913 867 ntBASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Upf3bQ3ULL6 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Gm36967-201ENSMUST00000193814 266 ntBASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Upf3bQ3ULL6 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Gm10052-201ENSMUST00000168019 960 ntBASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Gm7729-201ENSMUST00000050143 801 ntBASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Upf3bQ3ULL6 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Gm44430-201ENSMUST00000203376 995 ntBASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Upf3bQ3ULL6 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Upf3bQ3ULL6 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Upf3bQ3ULL6 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms