Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col8a1Q00780 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col8a1Q00780 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col8a1Q00780 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col8a1Q00780 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col8a1Q00780 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Col8a1Q00780 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Col8a1Q00780 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Gm13036-201ENSMUST00000117799 748 ntBASIC13.87□□□□□ -0.19
Col8a1Q00780 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Col8a1Q00780 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC13.87□□□□□ -0.19
Col8a1Q00780 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC13.87□□□□□ -0.19
Col8a1Q00780 Gm45683-201ENSMUST00000210825 1247 ntBASIC13.87□□□□□ -0.19
Col8a1Q00780 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.87□□□□□ -0.19
Col8a1Q00780 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC13.87□□□□□ -0.19
Col8a1Q00780 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Col8a1Q00780 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Col8a1Q00780 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col8a1Q00780 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Col8a1Q00780 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
Col8a1Q00780 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Gm15920-201ENSMUST00000118998 402 ntBASIC13.86□□□□□ -0.19
Col8a1Q00780 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC13.86□□□□□ -0.19
Col8a1Q00780 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC13.86□□□□□ -0.19
Col8a1Q00780 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Gm10175-201ENSMUST00000086013 645 ntBASIC13.86□□□□□ -0.19
Col8a1Q00780 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col8a1Q00780 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Gm13127-201ENSMUST00000118978 1389 ntBASIC13.85□□□□□ -0.19
Col8a1Q00780 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Col8a1Q00780 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 H2af-ps-201ENSMUST00000119066 295 ntBASIC13.85□□□□□ -0.19
Col8a1Q00780 Gm6184-201ENSMUST00000120403 1261 ntBASIC13.85□□□□□ -0.19
Col8a1Q00780 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Gm37584-201ENSMUST00000193595 1290 ntBASIC13.85□□□□□ -0.19
Col8a1Q00780 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC13.85□□□□□ -0.19
Col8a1Q00780 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC13.85□□□□□ -0.19
Col8a1Q00780 Ndufaf2-202ENSMUST00000223734 556 ntBASIC13.85□□□□□ -0.19
Col8a1Q00780 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Col8a1Q00780 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col8a1Q00780 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Col8a1Q00780 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms