Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Gm5712-201ENSMUST00000199748 1043 ntBASIC14.05□□□□□ -0.16
Nkx3-1P97436 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.05□□□□□ -0.16
Nkx3-1P97436 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Gm9889-202ENSMUST00000206983 1577 ntBASIC14.05□□□□□ -0.16
Nkx3-1P97436 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Nkx3-1P97436 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Nkx3-1P97436 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Gm7506-201ENSMUST00000207758 815 ntBASIC14.03□□□□□ -0.16
Nkx3-1P97436 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.03□□□□□ -0.16
Nkx3-1P97436 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms